PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_9AFA4B870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 33669.5 Da PI: 9.3332 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.4e-31 | 108 | 167 | 2 | 59 |
--SS-EEEEEEE--TT-SS-E..EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefpr..sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fpr sYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ Traes_1BL_9AFA4B870.1 108 EDGYRWRKYGQKAVKNSPFPRcrSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 167 8******************95449***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-32 | 92 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-27 | 99 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.08 | 102 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.9E-36 | 107 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-23 | 108 | 167 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MLASDGAAGA VVVPDGGPGG TAHSVSVSST SSEAGVGGGG AVEDEAGKCK KEEGEGDDES 60 KEAAADGEAD KTKKGAAKGK GAAKAKGEKR PRQARFAFMT KSEVDHLEDG YRWRKYGQKA 120 VKNSPFPRCR SYYRCTTQKC PVKKRVERSY QDAAVVITTY EGKHTHPIPA TLRGANHLLA 180 AHAHAHGGHG LIHPGMFRMP APPGAFRPGD ALGSFLQQQH AAMQHQQQVA AAGMAMRQAN 240 AMASSHMQQA PPADRGLAAA MAGGTTGNST HTVSSSSGTD PLRMEHLMAQ DYGLLQDMLM 300 PPSFAHSDGA TNSNNNAHNR H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 98 | 170 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 98 | 170 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341844 | 4e-98 | AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds. | |||
GenBank | AY341855 | 4e-98 | AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds. | |||
GenBank | AY870604 | 4e-98 | AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198305.1 | 1e-154 | probable WRKY transcription factor 28 | ||||
TrEMBL | A0A446KC87 | 0.0 | A0A446KC87_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_9AFA4B870.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 7e-44 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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