PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_9636192C8.1 | ||||||||
Common Name | Tamyb2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 38aa MW: 4407.98 Da PI: 8.5668 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.6 | 9e-11 | 6 | 38 | 1 | 35 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 rg ++++E++ ++ +++ lG++ W+ Ia++++ gR Traes_1BL_9636192C8.1 6 RGCFSQQEEDHIIALHQILGNR-WSQIASHLP-GR 38 899*******************.*********.98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.859 | 1 | 38 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-14 | 1 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.71E-9 | 2 | 38 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.2E-9 | 6 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-5 | 9 | 38 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 38 aa Download sequence Send to blast |
RPDLKRGCFS QQEEDHIIAL HQILGNRWSQ IASHLPGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB252145 | 8e-57 | AB252145.1 Triticum aestivum Tamyb2 mRNA for myb-related protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180810.1 | 4e-19 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 4e-20 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A446K8S9 | 4e-19 | A0A446K8S9_TRITD; Uncharacterized protein | ||||
STRING | EMT06211 | 6e-19 | (Aegilops tauschii) | ||||
STRING | Traes_1BL_9636192C8.1 | 2e-20 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 9e-17 | myb domain protein 46 |