PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_92756E39D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 31903.1 Da PI: 9.8892 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.4 | 1.9e-29 | 5 | 79 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++ +glkktLvfy+g+apkg++++W+m+eyrl Traes_1BL_92756E39D.1 5 GEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADRMIRGENSRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 79 689**********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 37.277 | 1 | 102 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-35 | 3 | 102 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-12 | 9 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MAVIGEKEWF FYVPRDRKYR NGDRPNRVTA SGYWKATGAD RMIRGENSRP IGLKKTLVFY 60 SGKAPKGVRS SWIMNEYRLP PPTTDADLFY KSEISLCRVY KRSGIDDGHG RPSSSNVQAS 120 SARPGTSRTI IPPAGQQVSS PSSTPMSPTQ QPSFHGILGQ GECSPAPLPA IMDQATAQLH 180 QPPPPPPPRP SAFASAMSST MPVAPAARGC TYSLMALADA PMMGSSSTPG DELSRLVGHS 240 QAYPNHPAVG RHFLPSPSSS QIPPLGEMPV PPADKLWDWI HPDTTGSKDY GSSSFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-34 | 2 | 102 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-34 | 2 | 102 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-34 | 2 | 102 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-34 | 2 | 102 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-34 | 2 | 103 | 69 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-34 | 2 | 102 | 66 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-34 | 2 | 102 | 66 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183242.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
TrEMBL | A0A3B5YZF7 | 0.0 | A0A3B5YZF7_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446K1Y0 | 0.0 | A0A446K1Y0_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_92756E39D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2826 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.2 | 7e-59 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
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