PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_7AA5EFD05.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 788aa    MW: 87457.2 Da    PI: 4.8632
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_7AA5EFD05.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-07639681145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            r +WT+ + +l++++ +q+G++ ++ I + ++  +++ q++ ++ 
  Traes_1BL_7AA5EFD05.2 639 RAKWTKSDTDLFYQGLRQFGSD-FAMIQQLFP-DKSRDQVRQKFK 681
                            569*******************.*********.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-9631686IPR009057Homeodomain-like
PfamPF159638.9E-24632712No hitNo description
PROSITE profilePS5129310.207637688IPR017884SANT domain
SMARTSM007171.7E-7638686IPR001005SANT/Myb domain
CDDcd001671.45E-5641681No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MIDDEANFGD ITDAPAEAEA AVKFHPNKLR GKLRKKSVPS RSVVPNHTVE TSDEKAVALS  60
QDNLSQGLTT NQEITSSTVL GSETIGGAEA CGGTLYTPSD DVLTVSSVDR VSQDDDPHDD  120
PSEVATLQEN LVVSDTQASS THPTSKTVDD LADFGELFDT HSEEENVAKS KLKIKVKLSK  180
AASKSRKTGQ KKAASTVDVV SQNKEDGNDD LRGCNDEQVQ APRHEEHVQT SDSQPPLGTD  240
DGTVDNFVNH NRILEEPGPE ETAAKLRPKS QRKPGRASSK AVGTSDDHAE ANLKDINASV  300
DIDSEDGLIN PHTDDTQPIF GEPSAEAAAT FLLDLGKKKG KGKSVTFVLP DDYEGVAATD  360
TNHNDIHSDE NLNTLPQQAP QKHCLTEEHS DDQEYTDRES QYHEGERSDH GVEQQSKLDV  420
GKQELSMKLR SRTEIQKVGL SEHIVDDHLD EDFVEPSATE QNNDSGDENT AGGKQKAPRK  480
SRKKDPNKEP LRGSKRTSTK STSEKSQPNQ QKNKSEVSSR GRKRALKDTM TEQPEKKLTH  540
RIRQKRAQEV QTLLQKPDHE IDRMKLSVTH LRLLQEARER IQSKTPSGPS SSNQSSSHFG  600
DTDDFDPFGD NYDNDRTENH ALENATKLNY HSYMDKKTRA KWTKSDTDLF YQGLRQFGSD  660
FAMIQQLFPD KSRDQVRQKF KSEDKKHPMQ VHDAILHRSR DNLYLKQVMK QLNIEDSLKD  720
INSTQKQEVA STEGNTGNDV ISETNISVEN VSNLSDEEMG TLQSEVKEGE DVAAGNADDV  780
DLDVFDWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3713370.0AK371337.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182802.10.0uncharacterized protein LOC109768495 isoform X1
RefseqXP_020182803.10.0uncharacterized protein LOC109768495 isoform X1
TrEMBLA0A3B5Z0Y50.0A0A3B5Z0Y5_WHEAT; Uncharacterized protein
STRINGTraes_1BL_7AA5EFD05.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-27MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]