PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_72808D4CB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9905.98 Da PI: 6.5268 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 17 | 64 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 W++ E + + +a + +G W+++a+ mg ++++++++ ++q + Traes_1BL_72808D4CB.1 17 EWSKKENKMFEEALAYYGVSapnLWEKVASAMGGTKSAEEVRRHFQLL 64 7*****************99**9**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.015 | 10 | 65 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.5E-7 | 14 | 67 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-12 | 16 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 17 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.67E-5 | 17 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSSGSSSRST SPSSDSEWSK KENKMFEEAL AYYGVSAPNL WEKVASAMGG TKSAEEVRRH 60 FQLLIDDVDN IEHGRIPFPK YKTQGFWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-19 | 9 | 85 | 2 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK361203 | 1e-76 | AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176377.1 | 6e-48 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 2e-23 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A3B5Z5V8 | 8e-59 | A0A3B5Z5V8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1BL_72808D4CB.1 | 1e-59 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 3e-23 | RAD-like 1 |
Publications ? help Back to Top | |||
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