PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1BL_60A56C455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 270aa MW: 29341.3 Da PI: 10.2114 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.1 | 2.3e-30 | 54 | 154 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d g+ W+++++y+++s++yvltkGW++Fvk++gL Traes_1BL_60A56C455.1 54 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaagaavP---GecKGVLLNFDDAAGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 138 89***************************8888776652...144889**************************************** PP -TT-EEEEEE-SSSEE CS B3 75 kegDfvvFkldgrsef 90 +gD vvF+++ + + Traes_1BL_60A56C455.1 139 HAGDAVVFYRSASGNN 154 *********7655444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-40 | 46 | 169 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-30 | 51 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.23E-27 | 52 | 149 | No hit | No description |
PROSITE profile | PS50863 | 13.549 | 54 | 164 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-20 | 54 | 164 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-27 | 54 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MLRKHTYPDE LAQHKRAYFA AAAASSHTSS SLPPASSPSS PAAPSPAARR EHLFDKTVTP 60 SDVGKLNRLV IPKQHAEKHF PLQLPAAGAA VPGECKGVLL NFDDAAGKLW RFRYSYWNSS 120 QSYVLTKGWS RFVKEKGLHA GDAVVFYRSA SGNNQLFIDC KLRSKTTTTT TAFVNVAAAA 180 PSPAPVTRTV RLFGVDLLTA PAPEHEEYGM AKTNKRSMDA SVEAPTPAHA VWKKRCVDFA 240 LTYRLATAPE FPRSRDQLEG VQAAGSTFAL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-50 | 51 | 164 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK371941 | 0.0 | AK371941.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143K20. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159696.1 | 1e-140 | AP2/ERF and B3 domain-containing protein Os05g0549800-like | ||||
Swissprot | Q8RZX9 | 1e-90 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A446KA40 | 1e-153 | A0A446KA40_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_60A56C455.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68840.2 | 8e-57 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|