PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_5E492444E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 85aa    MW: 9397.4 Da    PI: 7.5204
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_5E492444E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.2e-101764347
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                            W++ E + + +a + +G g    W+++a+ mg ++++++++ ++q +
  Traes_1BL_5E492444E.1 17 EWSKKENKMFEEALAYYGEGapnLWEKVASAMGGTKSAEEVRRHFQVL 64
                           7*********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9461065IPR017877Myb-like domain
SMARTSM007174.0E-81467IPR001005SANT/Myb domain
SuperFamilySSF466897.4E-121672IPR009057Homeodomain-like
PfamPF002494.8E-91764IPR001005SANT/Myb domain
CDDcd001676.37E-61765No hitNo description
Gene3DG3DSA:1.10.10.601.8E-51771IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MSSGSSSRST SPSSGSEWSK KENKMFEEAL AYYGEGAPNL WEKVASAMGG TKSAEEVRRH  60
FQVLVDDISN IEYGRIPFPK YKTQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-211485777RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3612031e-79AK361203.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1135A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176359.11e-44protein RADIALIS-like 3
SwissprotQ1A1738e-24RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3B5Z4T73e-55A0A3B5Z4T7_WHEAT; Uncharacterized protein
TrEMBLA0A446KCH63e-55A0A446KCH6_TRITD; Uncharacterized protein
STRINGTraes_1BL_5E492444E.13e-56(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-23RAD-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]