PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1BL_53C31B54B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 68aa MW: 7718.84 Da PI: 10.1891 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60.8 | 2.4e-19 | 1 | 68 | 18 | 74 |
--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 18 lpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 +pk++ae+h +g + +++ l + d g++W+++++y+++s++yvltkGW++Fvk++gL Traes_1BL_53C31B54B.1 1 IPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 68 8**********988888777532.34899**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.688 | 1 | 68 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-16 | 1 | 68 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-21 | 1 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.63E-14 | 1 | 68 | No hit | No description |
SuperFamily | SSF101936 | 8.5E-17 | 1 | 68 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
IPKQHAEKHF PLQLPSAGAA VSGECKGMLL NFDDAAGKVW RFRYSYWNSS QSYVLTKGWS 60 RFVKEKGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 5e-30 | 1 | 68 | 31 | 92 | DNA-binding protein RAV1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009310 | 4e-91 | BT009310.1 Triticum aestivum clone wlm1.pk0022.d1:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159694.1 | 2e-43 | AP2/ERF and B3 domain-containing protein Os05g0549800-like | ||||
Swissprot | Q8RZX9 | 1e-36 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A446KA87 | 2e-43 | A0A446KA87_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446KAH4 | 2e-42 | A0A446KAH4_TRITD; Uncharacterized protein | ||||
STRING | Traes_1BL_53C31B54B.1 | 2e-44 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-31 | related to ABI3/VP1 2 |
Publications ? help Back to Top | |||
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