PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_469FA45C6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-PHD
Protein Properties Length: 1220aa    MW: 134640 Da    PI: 4.5401
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_469FA45C6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.2e-105726121252
                            HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
               Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                             e+L+++F  ++yps++ +e LA++lgLt  qV  WF   R
  Traes_1BL_469FA45C6.2 572 NERLNQYFTTDQYPSRAVKESLAQELGLTFHQVNKWFESTR 612
                            589**********************************8766 PP
2Homeobox34.53.5e-11104910891353
                             HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
               Homeobox   13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53  
                             ++L e F+ ++yps++ +e LA++lgLt rqV  WF  rR 
  Traes_1BL_469FA45C6.2 1049 QRLHEQFKTDQYPSRAVKESLAQELGLTFRQVEKWFESRRR 1089
                             6899***********************************96 PP
3PHD39.21.5e-13224279151
                            SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                    PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                            +C+ C+   ++ +++++lCdg C++ fH++Cl+++l ++++peg   wlC+ C++k
  Traes_1BL_469FA45C6.2 224 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 279
                            599999854555********66*********************999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.44E-13215282IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-12221278IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.878222279IPR019787Zinc finger, PHD-finger
CDDcd155043.83E-26224276No hitNo description
SMARTSM002491.9E-10224277IPR001965Zinc finger, PHD-type
PROSITE patternPS013590225276IPR019786Zinc finger, PHD-type, conserved site
PfamPF006281.3E-10225279IPR019787Zinc finger, PHD-finger
SuperFamilySSF466894.71E-10555613IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-11556612IPR009057Homeodomain-like
PROSITE profilePS5007112.6558618IPR001356Homeobox domain
SMARTSM003892.8E-8560622IPR001356Homeobox domain
CDDcd000862.14E-9561612No hitNo description
PfamPF000461.8E-7572612IPR001356Homeobox domain
PROSITE profilePS5007113.97710341094IPR001356Homeobox domain
SMARTSM003895.8E-1010371098IPR001356Homeobox domain
CDDcd000862.17E-1110391092No hitNo description
SuperFamilySSF466896.42E-1110431099IPR009057Homeodomain-like
PfamPF000461.4E-810491089IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1110491102IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1220 aa     Download sequence    Send to blast
MDKSNTSGCA EDTIETRSYA NSSLNPEALK HQSFPFPYTS PSGERKNFKR AANRGRKGSR  60
VLSSRTYPLK SSESTVRVLR SRSVADKSPS DAVQTPTEKA AKKPPSDSVD TLVKPAAKRI  120
KRDRPTKGGP DDELSKIRKR IRYILNRMNY HQSFLEAYAS EGWKNQSLEK IRPEKELERA  180
KEEIVRCKLR IREAFQNLDH LLTVGKLEES LFDSEGKISS DDIVCATCSL QEATLNNDII  240
LCDGACDRGF HQNCLNPPLL TKDIPEGEEG WLCPACDCKI DCIELINELQ GTDLDINDSW  300
EKVFPEAAAV AHGPMQNDVA DLPSDDSEDD DFDPNISEEH VAGHAEGSSE EDGDEGSDSD  360
DSNFMTSSDN SEHVKEKVKV DDLGLPSEDS EDDDYDPAGP DSDKDIEEKQ DESDFTSDSD  420
EFCAEITKSC SKDEVSSGPK VGGRTNDLEG APVRPNTSMS HSKDLEIDPD VILPSTKRQV  480
QRLDYKKLYD DTYGEAPSES SDGDEWSGKS TLKEDNEERN EVDSFARKSS RGTRAVHPDG  540
FHGLVNDQHA GGLTSAGSNS KANKRHFGPV INERLNQYFT TDQYPSRAVK ESLAQELGLT  600
FHQVNKWFES TRHARAAAMK NGTQLEKQSN SRKKKSSDAT HMEVKDQPNA CKEEGIRQHS  660
PVKQDTDGGQ RTHVPPESSQ SYTKTSGLIG CPKSESRENH EKNTSSKYVG MPTDGSAEDQ  720
ILELEPEDEG SDSDDLNFVT RSGNSEPLKN REKIDDLGLP SAYSEDDDYD FDEVIEMMQS  780
SSDESNFTTS SDNPEDVKEK VDDLGLPSED SEDDDYDPAG PGSDEDIGKK QSSSEKSHSS  840
DKSENRKTKR KVDDLGLPSE DSEDDDYDPA SPDSDKDIEE KQDESDFSSD SDDFCVEIAK  900
SCCGQEGVPS GAKVGGDRTD DLEGTTICAN AAISNLPSKD PEMDQYVVLP VSARQKVQSP  960
DSKKLAAYGK APSDSSYSEE LSKKGTPEKD KGKESEAGSF VRQSNEFTPQ RSQQSFHGSV  1020
NGQNAEELLT PNGSSTTGQK RQYGPIINQR LHEQFKTDQY PSRAVKESLA QELGLTFRQV  1080
EKWFESRRRH IRVASNKGST HVENHSTKEN PNECKSDALN EDTPSGILNE GITQDGPLKQ  1140
DIGGGLKTNA STPNSSQRYT TPLVRRPKGE SRENHMKNTS SSSSGRPEGS DAGYAVLALE  1200
ALDEKTRSKM LQELKKRKIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141KIRKRIR
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686280.0AK368628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077C19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161929.10.0homeobox protein HOX1A-like
SwissprotP466050.0HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A3B5Z2U40.0A0A3B5Z2U4_WHEAT; Uncharacterized protein
STRINGTraes_1BL_469FA45C6.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-75Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]