PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BL_332C278BD.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 155aa MW: 16162.2 Da PI: 8.0326

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BL_332C278BD.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	44	3.7e-14	30	54	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+sV+Ca+C tV Traes_1BL_332C278BD.2 30 CSGCRNLLMYPAGATSVCCAVCSTV 54 ***********************99 PP
2	zf-LSD1	46.7	5.3e-15	69	93	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Traes_1BL_332C278BD.2 69 CGGCHTLLMYIRGATSVQCSCCHTV 93 ************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	9.1E-4	24	93	No hit	No description
TIGRFAMs	TIGR01053	1.1E-13	27	57	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.0E-11	30	54	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.7E-15	66	95	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-12	69	93	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MPVPLAPYPT PPVPFTPPAP NAGAQSQLVC SGCRNLLMYP AGATSVCCAV CSTVTAVPAP 60 GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLAMEGI STKAFISLSL PGLQVVYAAG 120 FDSLFETMLT LIRVCKTLLL SRMYSEVGKA LAISR

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF553327	1e-154	EF553327.1 Triticum aestivum LSD1-type zinc finger protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019079971.1	9e-55	PREDICTED: protein LSD1 isoform X1
Swissprot	Q0J7V9	2e-48	LSD1_ORYSJ; Protein LSD1
TrEMBL	A0A446K362	1e-106	A0A446K362_TRITD; Uncharacterized protein
STRING	Traes_1BL_332C278BD.2	1e-107	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	1e-32	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]