PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1BL_32F10AE2C.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 372aa MW: 41893.4 Da PI: 9.7813

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1BL_32F10AE2C.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.4	5.9e-07	63	105	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W+ eE ++l ++++++ + + Ia ++++ R+ +++ksr+++ Traes_1BL_32F10AE2C.1 63 TWSREETDQLFELCQRFDLR-FIVIADRFPTARSVEDLKSRYYS 105 7*****************.*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	2.7E-31	36	110	IPR032563	DAMP1, SANT/Myb-like domain
SMART	SM00717	1.7E-5	60	109	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.79E-6	61	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-5	62	108	IPR009057	Homeodomain-like
CDD	cd11658	3.72E-18	64	106	No hit	No description
Pfam	PF05499	9.3E-6	224	306	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
QVAWQWLPFT SSARTDNLQL YHWVRVVNNV PPTGDYDFAK YNTKVDVLKY TDEEYEKYLT 60 EPTWSREETD QLFELCQRFD LRFIVIADRF PTARSVEDLK SRYYSVTRAL LIARARSFDE 120 VAGNPLVKET FNAAHETERK RALSALFSQT KQQERKDAEV LAEAKRIMES RAANKNVEEA 180 GAPTSIPNAA VPADGVSPLS NNLPSSAATH PAAAANTSIP DTLRMLKVYL RTHALDQMVQ 240 AVTASAGIRM IKRVDQTLQD LGVNLKPKVP TKAVCAEHLE LRNEILTLLN IQKQLQNKEA 300 EVLANRESSF TEAPTTPKRS NRDIDRPFVP DMAGFGGERA VKRDHKRKAT GRFDAPPSPT 360 QGKRPRKMKA SD

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

QVAWQWLPFT SSARTDNLQL YHWVRVVNNV PPTGDYDFAK YNTKVDVLKY TDEEYEKYLT  60
EPTWSREETD QLFELCQRFD LRFIVIADRF PTARSVEDLK SRYYSVTRAL LIARARSFDE  120
VAGNPLVKET FNAAHETERK RALSALFSQT KQQERKDAEV LAEAKRIMES RAANKNVEEA  180
GAPTSIPNAA VPADGVSPLS NNLPSSAATH PAAAANTSIP DTLRMLKVYL RTHALDQMVQ  240
AVTASAGIRM IKRVDQTLQD LGVNLKPKVP TKAVCAEHLE LRNEILTLLN IQKQLQNKEA  300
EVLANRESSF TEAPTTPKRS NRDIDRPFVP DMAGFGGERA VKRDHKRKAT GRFDAPPSPT  360
QGKRPRKMKA SD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	3e-19	35	115	4	88	DNA methyltransferase 1-associated protein 1
4iej_A	3e-19	35	115	4	88	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373872	0.0	AK373872.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3046A24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020180104.1	0.0	SWR1-complex protein 4
Swissprot	Q8VZL6	1e-155	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A3B5Z427	0.0	A0A3B5Z427_WHEAT; Uncharacterized protein
TrEMBL	A0A446K962	0.0	A0A446K962_TRITD; Uncharacterized protein
STRING	Traes_1BL_32F10AE2C.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6153	12	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-155	MYB_related family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]