PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_0F9F21D68.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 59aa    MW: 6599.36 Da    PI: 6.4915
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_0F9F21D68.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.24.3e-123593082
                    NAM 30 leevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82
                           +e+vi+ vd+++++Pw+Lp+    +++++ + w++F+ r+ ++a+g r++r+t sgy
  Traes_1BL_0F9F21D68.1  3 IERVIPVVDVCSLDPWQLPEvhrgACAGHGEPWFYFCARQDREARGGRPSRTTPSGY 59
                           5578**************95456544557889**********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.068159IPR003441NAC domain
SuperFamilySSF1019411.7E-13559IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 59 aa     Download sequence    Send to blast
GDIERVIPVV DVCSLDPWQL PEVHRGACAG HGEPWFYFCA RQDREARGGR PSRTTPSGY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599547e-74AK359954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1107F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158921.12e-36NAC domain-containing protein 90-like
SwissprotQ9FMR33e-16NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A452Z7N92e-35A0A452Z7N9_AEGTS; Uncharacterized protein
STRINGTraes_1AL_C76BCC7EC.11e-35(Triticum aestivum)
STRINGTraes_1BL_0F9F21D68.16e-37(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-18NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]