PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_F3E49A47C.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 257aa    MW: 30036.7 Da    PI: 9.1037
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_F3E49A47C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS219.12.3e-671249128374
                   GRAS 128 LlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213
                            ++q +a+++eg+p+lRiTg++ p++g    e++eetg+rLa++A+ ++vpf+++ ++a+r+e++++e+L++++gE+l++n++l++++l
  Traes_1AS_F3E49A47C.1   1 MIQRFAKQEEGAPKLRITGIDIPQPGlrPCEMIEETGKRLADYANMFKVPFQYQGIAASRWETIKIEDLNIEEGEVLIINCMLRMKNL 88 
                            59************************9999********************************************************** PP

                   GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                             +e+ +++s+rdev+k++++++Pk+++    +  ++s+ F +rf e + +ys++fd+l+a++pr++e+r+++Er+l+gr++ + +ace
  Traes_1AS_F3E49A47C.1  89 GHETIAINSTRDEVIKTMRRMNPKIFISGTVNGLRSSPFFIQRFKEVMFHYSSMFDMLDANIPRDNEARKTIERVLFGRDALKSIACE 176
                            **************************************************************************************** PP

                   GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             ae ++r+e++++W++r+ +aGF+++p++  + k++    +  + +++   e+ g+l++gWk+r ++++S W+
  Traes_1AS_F3E49A47C.1 177 DAEWTKRRESYRQWQARFLKAGFQQLPVDPAILKKIVQKKNSLYHEEFFAVEDCGWLLQGWKGRVIYAISKWK 249
                            ************************************99999999899999**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.0E-651249IPR005202Transcription factor GRAS
PROSITE profilePS5098536.8951229IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MIQRFAKQEE GAPKLRITGI DIPQPGLRPC EMIEETGKRL ADYANMFKVP FQYQGIAASR  60
WETIKIEDLN IEEGEVLIIN CMLRMKNLGH ETIAINSTRD EVIKTMRRMN PKIFISGTVN  120
GLRSSPFFIQ RFKEVMFHYS SMFDMLDANI PRDNEARKTI ERVLFGRDAL KSIACEDAEW  180
TKRRESYRQW QARFLKAGFQ QLPVDPAILK KIVQKKNSLY HEEFFAVEDC GWLLQGWKGR  240
VIYAISKWKP DETYDGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-191249127375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198291.11e-158scarecrow-like protein 9
RefseqXP_020198297.11e-157scarecrow-like protein 34
TrEMBLA0A446IIC90.0A0A446IIC9_TRITD; Uncharacterized protein
STRINGTraes_1AS_F3E49A47C.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-88GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]