PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_F3E49A47C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 257aa MW: 30036.7 Da PI: 9.1037 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 219.1 | 2.3e-67 | 1 | 249 | 128 | 374 |
GRAS 128 LlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrl 213 ++q +a+++eg+p+lRiTg++ p++g e++eetg+rLa++A+ ++vpf+++ ++a+r+e++++e+L++++gE+l++n++l++++l Traes_1AS_F3E49A47C.1 1 MIQRFAKQEEGAPKLRITGIDIPQPGlrPCEMIEETGKRLADYANMFKVPFQYQGIAASRWETIKIEDLNIEEGEVLIINCMLRMKNL 88 59************************9999********************************************************** PP GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +e+ +++s+rdev+k++++++Pk+++ + ++s+ F +rf e + +ys++fd+l+a++pr++e+r+++Er+l+gr++ + +ace Traes_1AS_F3E49A47C.1 89 GHETIAINSTRDEVIKTMRRMNPKIFISGTVNGLRSSPFFIQRFKEVMFHYSSMFDMLDANIPRDNEARKTIERVLFGRDALKSIACE 176 **************************************************************************************** PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ae ++r+e++++W++r+ +aGF+++p++ + k++ + + +++ e+ g+l++gWk+r ++++S W+ Traes_1AS_F3E49A47C.1 177 DAEWTKRRESYRQWQARFLKAGFQQLPVDPAILKKIVQKKNSLYHEEFFAVEDCGWLLQGWKGRVIYAISKWK 249 ************************************99999999899999**********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 8.0E-65 | 1 | 249 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 36.895 | 1 | 229 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MIQRFAKQEE GAPKLRITGI DIPQPGLRPC EMIEETGKRL ADYANMFKVP FQYQGIAASR 60 WETIKIEDLN IEEGEVLIIN CMLRMKNLGH ETIAINSTRD EVIKTMRRMN PKIFISGTVN 120 GLRSSPFFIQ RFKEVMFHYS SMFDMLDANI PRDNEARKTI ERVLFGRDAL KSIACEDAEW 180 TKRRESYRQW QARFLKAGFQ QLPVDPAILK KIVQKKNSLY HEEFFAVEDC GWLLQGWKGR 240 VIYAISKWKP DETYDGQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-19 | 1 | 249 | 127 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198291.1 | 1e-158 | scarecrow-like protein 9 | ||||
Refseq | XP_020198297.1 | 1e-157 | scarecrow-like protein 34 | ||||
TrEMBL | A0A446IIC9 | 0.0 | A0A446IIC9_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AS_F3E49A47C.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-88 | GRAS family protein |
Publications ? help Back to Top | |||
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