PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_D967CFB69.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 247aa    MW: 28786.5 Da    PI: 10.6468
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_D967CFB69.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS110.22.8e-341140207345
                   GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgre 293
                            ++++++l +e+ +++s+rd+vLk+++ ++Pk+++    +  ++s+ F++rf e + +ys++fd+l ++ +pr++++r+++Er+++g++
  Traes_1AS_D967CFB69.2   1 MFRMKNLGHETEAINSARDKVLKIMRMMNPKIFISGTVNGLRSSPFFVKRFKEVIFHYSSMFDMLdANVVPRDNKARKMIERMIFGKD 88 
                            588999***********************************************************555689999************** PP

                   GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                            + n++acegaer+er e++++W++r  +aGF+++p++  +   + ++ +++ 
  Traes_1AS_D967CFB69.2  89 ALNIIACEGAERTERPESYRQWHARCVKAGFQQLPVDPAVLRIIVYMKNTFW 140
                            ***********************************99888776666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.7251149IPR005202Transcription factor GRAS
PfamPF035149.7E-321140IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MFRMKNLGHE TEAINSARDK VLKIMRMMNP KIFISGTVNG LRSSPFFVKR FKEVIFHYSS  60
MFDMLDANVV PRDNKARKMI ERMIFGKDAL NIIACEGAER TERPESYRQW HARCVKAGFQ  120
QLPVDPAVLR IIVYMKNTFW HEEFFAVEDR GWPDTIFELS IGALFYWGRK LEELPRSLWS  180
IFLIGTLFCC KVVDHCSEYL SKLGGRGRRR SARRRGPPRR LPSPASSHSP PPPATCRASS  240
WRTWRCH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198289.16e-81scarecrow-like protein 34
TrEMBLA0A446IIF51e-102A0A446IIF5_TRITD; Uncharacterized protein
STRINGTraes_1AS_D967CFB69.20.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.14e-47GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]