PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_D3AEB9F29.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 71aa    MW: 8600.75 Da    PI: 9.6623
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_D3AEB9F29.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS37.53.5e-12265300364
                   GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                             ega+r+er e++++W++r+ +aGF+++p+     k +++  + ++++ +   e++g+l++gWk+
  Traes_1AS_D3AEB9F29.1   2 VEGADRTERPESYRQWQARFFKAGFQQLPVAPAFFKRVHMKNSLYHEE-FFAVEHRGWLIQGWKG 65 
                            599*******************************************55.8888999*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.569156IPR005202Transcription factor GRAS
PfamPF035141.2E-9265IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
HVEGADRTER PESYRQWQAR FFKAGFQQLP VAPAFFKRVH MKNSLYHEEF FAVEHRGWLI  60
QGWKGYIQME T
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198294.16e-36scarecrow-like protein 9
SwissprotP0C8842e-15SCL34_ARATH; Scarecrow-like protein 34
TrEMBLA0A446IID85e-33A0A446IID8_TRITD; Uncharacterized protein
TrEMBLR7WF621e-34R7WF62_AEGTA; Uncharacterized protein
STRINGTraes_1AS_D3AEB9F29.11e-46(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.18e-18GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]