PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AS_B348717F1.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 361aa MW: 37197.5 Da PI: 8.483

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AS_B348717F1.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.9	1.9e-37	88	147	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprCds+ntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Traes_1AS_B348717F1.1 88 PEQGLKCPRCDSANTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 147 57899*************************************************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-37	72	146	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.7E-32	90	146	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.677	92	146	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	94	130	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MIFPPSFLDS SSWNDNQHAH HQQVAAASCG GGAGDGGCNN HELLQPSIMQ QGTLAEGGDG 60 GGSGGQVVGP AKPMSMSERA RLARVPLPEQ GLKCPRCDSA NTKFCYFNNY SLSQPRHFCR 120 ACRRYWTRGG ALRNVPVGGG YRRHAKRAKP KQAAAAAAAG APAASGAASG GSTTSSTTSA 180 CTTMSNPAPV LPAMLQNGGG GNLSGLLPPL LRLADFDAMS LGSTFSGMGK PSPVDSPAGY 240 YLGGGGGGAV PGLEQWRVQQ MQGFPFFQAM ADQQHTLTPA AAPAMAMPGM FHYLGLGNGG 300 DGRGVHEDDG GDQQFHHAMP SKRECYPRSG SIAMYGGDHH LTAGAGYTSS YSNAATGNHL 360 L

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MIFPPSFLDS SSWNDNQHAH HQQVAAASCG GGAGDGGCNN HELLQPSIMQ QGTLAEGGDG  60
GGSGGQVVGP AKPMSMSERA RLARVPLPEQ GLKCPRCDSA NTKFCYFNNY SLSQPRHFCR  120
ACRRYWTRGG ALRNVPVGGG YRRHAKRAKP KQAAAAAAAG APAASGAASG GSTTSSTTSA  180
CTTMSNPAPV LPAMLQNGGG GNLSGLLPPL LRLADFDAMS LGSTFSGMGK PSPVDSPAGY  240
YLGGGGGGAV PGLEQWRVQQ MQGFPFFQAM ADQQHTLTPA AAPAMAMPGM FHYLGLGNGG  300
DGRGVHEDDG GDQQFHHAMP SKRECYPRSG SIAMYGGDHH LTAGAGYTSS YSNAATGNHL  360
L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM084353	0.0	AM084353.1 Hordeum vulgare subsp. vulgare dof5 gene for dof zinc finger protein 5, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167377.1	1e-167	dof zinc finger protein DOF3.6-like isoform X2
TrEMBL	A0A3B5XV27	0.0	A0A3B5XV27_WHEAT; Uncharacterized protein
STRING	Traes_1AS_B348717F1.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	1e-40	OBF-binding protein 3

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]