PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_985BB33A1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 27747.2 Da PI: 10.6908 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.6 | 5.2e-31 | 93 | 143 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+ Traes_1AS_985BB33A1.2 93 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 143 79***********************************************95 PP | |||||||
2 | K-box | 88.4 | 1.4e-29 | 160 | 244 | 3 | 87 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +ss ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++ +++ Traes_1AS_985BB33A1.2 160 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRVRNT 244 4455559999***********************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.543 | 85 | 145 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-41 | 85 | 144 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.27E-42 | 86 | 162 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-32 | 86 | 157 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-32 | 87 | 107 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 87 | 141 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-26 | 94 | 141 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-32 | 107 | 122 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-32 | 122 | 143 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-21 | 170 | 244 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.823 | 171 | 247 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MATTGWGNSR YARRGRDSAR GSGAYSLRKP QRERHHQGEE MDHSLSFSSY LQRRVQEVAA 60 QENRVKESAS PGSGSGSAGG AAEKMGRGRI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 120 VLCDAEVALI VFSGRGRLYE YSNNSVKATI ERYKKATSDT SSAGTVAEIN AQHYQQESAK 180 LKQQITTLQN SNRTLIGDTM ATMSHRDLKQ LEGRLDKGLG KIRARKNELL CAEIEYMQRR 240 VRNTIKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 4e-20 | 85 | 153 | 1 | 69 | MEF2C |
5f28_B | 4e-20 | 85 | 153 | 1 | 69 | MEF2C |
5f28_C | 4e-20 | 85 | 153 | 1 | 69 | MEF2C |
5f28_D | 4e-20 | 85 | 153 | 1 | 69 | MEF2C |
6byy_A | 4e-20 | 85 | 153 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 4e-20 | 85 | 153 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 4e-20 | 85 | 153 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 4e-20 | 85 | 153 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 85 | 153 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT008957 | 0.0 | BT008957.1 Triticum aestivum clone wdk1c.pk011.o20:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176047.1 | 1e-142 | MADS-box transcription factor 58-like isoform X1 | ||||
Swissprot | Q2V0P1 | 1e-100 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A3B5XWW0 | 0.0 | A0A3B5XWW0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446IR53 | 0.0 | A0A446IR53_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AS_985BB33A1.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-87 | MIKC_MADS family protein |