PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_8C62DF06E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 73aa    MW: 8315.33 Da    PI: 10.464
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_8C62DF06E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93.1e-17855956
                           HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           + q+ +Lee+F+k+++p++++ + L++++g++  q+++WFq rRa+ k
  Traes_1AS_8C62DF06E.1  8 PRQILVLEEAFKKCPHPDQTQVANLSRETGMEVHQIQYWFQTRRAQIK 55
                           78*******************************************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.1E-11161IPR001356Homeobox domain
SuperFamilySSF466899.41E-16767IPR009057Homeodomain-like
PfamPF000469.6E-15855IPR001356Homeobox domain
CDDcd000862.12E-13855No hitNo description
Gene3DG3DSA:1.10.10.604.8E-15859IPR009057Homeodomain-like
PROSITE profilePS5007112.4551057IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MDGHRRAPRQ ILVLEEAFKK CPHPDQTQVA NLSRETGMEV HQIQYWFQTR RAQIKGSSSN  60
TRPPTKGSSS PDP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150479.12e-16homeobox-leucine zipper protein ROC8-like
SwissprotQ69T589e-16ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A452XN111e-36A0A452XN11_AEGTS; Uncharacterized protein
STRINGTraes_1AS_8C62DF06E.11e-48(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2510425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.13e-15homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]