PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_61D017632.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 856aa MW: 94902.4 Da PI: 6.0694 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.9e-19 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l Traes_1AS_61D017632.2 50 KGNWTLEEDDILRKAVEIHNGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.6e-18 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++++ vk++G+ W+tIa+ + gR +kqc++rw+++l Traes_1AS_61D017632.2 102 KGPWSKEEDDIIIQMVKKYGPTKWSTIAQALS-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 53.6 | 5e-17 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ ++ ++ gRt++ +k++w+ Traes_1AS_61D017632.2 154 KDAWTQEEEIRLIQAHHIYGNK-WAELSKFLP-GRTDNAIKNHWH 196 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.034 | 45 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-17 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-16 | 50 | 96 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.88E-16 | 51 | 106 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-24 | 52 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.39E-15 | 52 | 96 | No hit | No description |
PROSITE profile | PS51294 | 31.218 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.13E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-17 | 101 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.75E-15 | 104 | 148 | No hit | No description |
Pfam | PF13921 | 6.0E-19 | 105 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-26 | 109 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 152 | 202 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 153 | 201 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.671 | 153 | 203 | IPR017930 | Myb domain |
CDD | cd00167 | 2.60E-12 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MTSDKGRTSK KAAEGSPSAL AVPDGRASSG PQKGQLSNGR TTGPARRSTK GNWTLEEDDI 60 LRKAVEIHNG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED DIIIQMVKKY 120 GPTKWSTIAQ ALSGRIGKQC RERWHNHLNP GINKDAWTQE EEIRLIQAHH IYGNKWAELS 180 KFLPGRTDNA IKNHWHSSVK KKYESYRAEG LLAQFQGLPA ALYPTGSLNV DSSSAMMQQN 240 SDGSGLNVNQ EVQDSSEFSQ SALANISSSQ VEQVDEPVGC HGQIHSSDGA HDSYSSCQEA 300 CDTKANDAAS TSPETRHQLS ISENDPDMHW QQDLSVADFD LQSELWQDIS YQSLTAPDSI 360 SADSFFSPNY QHSACSSEVA NNFEEPLYPL HTYSSSRTGT VHHQSSATSV PPSFICSGRA 420 SQIVSSELPI VPESKEQQMT SVEESLPIVP ESKEQQLTSV EESQPLESTT MGREASPNHG 480 KSVVGQKQHS ESLCYEPPCF PSLEVPFVSC ELISSSDLPE YSPLGIRQFM RPSMSFSTPL 540 RLWSSPTRDR SPDDVLKSAA KSSVCTPSIM KKRQREPPSP IPDVRLAKKM GTEKDCGSSA 600 MPSTRTERSC RDATRDDSLD LIPENSKDII YQGKTEDNAN INTLEKRERC STTERDTAYN 660 LVSAGILTDR NGPNPERRKL NTPTKSFSKD IISSRSKPTE LLVEKSSVYI NADYEYVNIL 720 ADTPGIKRGL ESPSAWKSPL FTNFQDGFFM SPTGTTFDAL GLVKQINEQN APALEEAHEL 780 LESGSLCNKE SSDKENIKHI VIKKEHATTN QISNVMSEAR ILDFNECTTP VKKKEDNRCS 840 TLGRSPTSSY VLKNVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-66 | 50 | 202 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-66 | 50 | 202 | 6 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951920 | 0.0 | JF951920.1 Triticum aestivum clone TaMYB35 R1R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174664.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | G9DR83 | 0.0 | G9DR83_WHEAT; R1R2R3-MYB protein | ||||
STRING | Traes_1AS_61D017632.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-104 | myb domain protein 3r-4 |
Publications ? help Back to Top | |||
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