PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_4DA31F550.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 622aa    MW: 68107.2 Da    PI: 5.7956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_4DA31F550.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-14452497454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +h + Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  Traes_1AS_4DA31F550.2 452 SHVMQERKRREKLNERFIVLRSLVPFV-----TKMDKASILGDTIEYVKQL 497
                            899***********************8.....8*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-468204IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.926448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17451507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-17452506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11452497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.05E-15452502No hitNo description
SMARTSM003531.1E-16454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0010214Biological Processseed coat development
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MASSGEVQRS LQAVAQGLRW TYALLWQLCP DQGALVWAEG HYNGAIKTRK TVQPAVAQAQ  60
VPAPAAEAAD QARSRQLREL FDSLAREAAA GGGTGFRDVH GCAQEARRPS AALAPEDLTE  120
TEWFYLMSAS YSFPPGVGLP GRAFARGGHV WLSRANEVDS KAFSRAILAR TVVCIPIVDG  180
VLEIGTTEKV EEDMGLVQYA MAIFMDQQET HMISSICHSN QTSHIDQQSF QTQRKTPTGQ  240
PKPEPNKFNP EYEDDEMEYD DDEIDAECAS GSASHDDHTT HNAGSSELMQ VETSERVRDG  300
CSSNFGDEIQ MLMVCQNSTD DHSNLHGQNE AWHFLYEELC SGYPQSSGTA GENQAMAENA  360
HYAQTLSLIL HRNNALRQGG GLNTGSYLAV SLQSSFSRWD AGIHGRTVAQ GTTRQKMLKS  420
VLLFFSAACN KPPGDPRCDD AGARREVDFG ASHVMQERKR REKLNERFIV LRSLVPFVTK  480
MDKASILGDT IEYVKQLTKR IQDLESSTVR GPAMSKEKRA LPTGMEGASS SSGSTPVATD  540
VQVSIIESDA LLELRCPDTH GLLVTIMQTL QEQLRLEVTS VQASSDHGVL LAELRAKVRE  600
VHGRRSSISQ VKRAIHLIIS SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-16719848225Transcription factor MYC3
4ywc_A5e-16719848225Transcription factor MYC3
4ywc_B5e-16719848225Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1456461ERKRRE
2457462RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155869.10.0basic helix-loop-helix protein A
TrEMBLA0A446IP740.0A0A446IP74_TRITD; Uncharacterized protein
STRINGTraes_1AS_4DA31F550.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.13e-60bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]