PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_306BB8CFE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 307aa    MW: 33779 Da    PI: 5.7325
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_306BB8CFE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-092392712355
                            SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
               Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                            +yp+++++ +LA+ +gL+ rq+ +WF N+R ++
  Traes_1AS_306BB8CFE.1 239 PYPTEDDKVRLAAMTGLDPRQINNWFVNQRKRH 271
                            8*****************************885 PP
2ELK34.44.6e-12191212122
                    ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                            EL+++Ll+KYsg+L+ L++EF+
  Traes_1AS_306BB8CFE.1 191 ELREMLLNKYSGCLSHLRTEFL 212
                            9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.8E-144589IPR005540KNOX1
PfamPF037907.9E-164785IPR005540KNOX1
SMARTSM012562.8E-2296147IPR005541KNOX2
PfamPF037911.0E-20100146IPR005541KNOX2
PROSITE profilePS5121310.039191211IPR005539ELK domain
SMARTSM011883.5E-6191212IPR005539ELK domain
PfamPF037898.2E-9191212IPR005539ELK domain
PROSITE profilePS5007112.212211274IPR001356Homeobox domain
SuperFamilySSF466891.67E-19213283IPR009057Homeodomain-like
SMARTSM003891.9E-12213278IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-25216276IPR009057Homeodomain-like
PfamPF059201.0E-15231270IPR008422Homeobox KN domain
CDDcd000862.27E-11237275No hitNo description
PROSITE patternPS000270249272IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEDLYSIHPG ISRRGEGDAA CSEVSGVAGD ASSPPPPPPP ADLTELMKTQ IAGHRRYPSL  60
LSAYIECRKV GATPEVASLL EEVGRPERRG GGAAAAAGEI GLDPELDEFM EAYCRLLSRY  120
KVELSRPLDE AASFLTTIRS QFKKLCGGGA TATSPHSDEM VESSEDEPCS GDTGASDAGM  180
QEQSSRLADR ELREMLLNKY SGCLSHLRTE FLKKRKKGKL PKDARLALVD WWNTHYRWPY  240
PTEDDKVRLA AMTGLDPRQI NNWFVNQRKR HWKPSEDMRF ALMEGVTGGG GGSSYDTTLC  300
FGTDSMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206215LRTEFLKKRK
2212216KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2486000.0AK248600.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158428.10.0homeobox protein knotted-1-like 10
SwissprotQ9FP291e-127KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A3B5XV090.0A0A3B5XV09_WHEAT; Uncharacterized protein
TrEMBLA0A446ILM70.0A0A446ILM7_TRITD; Uncharacterized protein
STRINGTraes_1AS_306BB8CFE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.13e-75KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]