PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_1104A122D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 154aa MW: 18048.1 Da PI: 9.8872 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 117.5 | 1.7e-36 | 29 | 143 | 75 | 187 |
GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 ++ l a++lf ++P+ ++s+ aNq+Il+ ++ +vHi+Df+is G+QWp+++q +a +++g+p+lRiTg++ ++g e+++e Traes_1AS_1104A122D.1 29 TDWLEAYSLFLATCPFKRVSYNFANQTILDVSQRRPKVHIVDFGISFGFQWPSMIQRFARQEGGAPKLRITGIEVRQPGfrPCEMIKE 116 566889*********************************************************************99999999***** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrle 187 tg+rLa++A+ +++pf+++ ++++++ Traes_1AS_1104A122D.1 117 TGKRLADYANMFNLPFQYQGIAEDEVL 143 ********************8666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 26.263 | 1 | 154 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.9E-34 | 29 | 143 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVIVIRDWHF TWWMALRRAC LGSGVRFTTD WLEAYSLFLA TCPFKRVSYN FANQTILDVS 60 QRRPKVHIVD FGISFGFQWP SMIQRFARQE GGAPKLRITG IEVRQPGFRP CEMIKETGKR 120 LADYANMFNL PFQYQGIAED EVLIINCIFR MKNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-17 | 9 | 139 | 62 | 197 | Protein SCARECROW |
5b3h_A | 4e-17 | 9 | 139 | 61 | 196 | Protein SCARECROW |
5b3h_D | 4e-17 | 9 | 139 | 61 | 196 | Protein SCARECROW |
5hyz_A | 4e-17 | 8 | 134 | 45 | 180 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198293.1 | 5e-71 | scarecrow-like protein 30 | ||||
Swissprot | O80933 | 3e-39 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A446IID8 | 8e-71 | A0A446IID8_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AS_1104A122D.1 | 1e-112 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-41 | GRAS family protein |
Publications ? help Back to Top | |||
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