PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AS_02E068C7E.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 262aa MW: 29137.9 Da PI: 6.4216 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.9 | 1.3e-11 | 174 | 241 | 30 | 99 |
..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++ +tl+ ++++W+ ++ ++ ++l+++W +Fv +n++++gD+++F ++ ++ +++v+++r+ Traes_1AS_02E068C7E.2 174 ENG--AVTLQMpGKSEKWRPRF--FIEKDNCMLAGNWLDFVCDNQVQVGDICIFVPEKGgERSTFTVHIIRA 241 333..45555534679******..66667799***********************9977699999***9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-16 | 134 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-16 | 134 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.03E-15 | 141 | 240 | No hit | No description |
PROSITE profile | PS50863 | 9.587 | 142 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-9 | 170 | 241 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
ILSNDQVLSG QWELVEVHEQ KIDELVKETQ PEALGFAEAS IDHFRLGRTD IGSNQGTKKT 60 ASCERGSSSH CRNTAKAAVT PSSSEKSVED SAREYESSES DDHPTPPEAD YGVIFRSYLS 120 GTQMERVNML IHKIKPETIV FVATMRKCDV QLPTPLLIIS KERSLAAAAH FPHENGAVTL 180 QMPGKSEKWR PRFFIEKDNC MLAGNWLDFV CDNQVQVGDI CIFVPEKGGE RSTFTVHIIR 240 AEATHRRGVK RVRSSLDSPV GV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020201512.1 | 1e-180 | uncharacterized protein LOC109787361 | ||||
TrEMBL | A0A3B5XV72 | 0.0 | A0A3B5XV72_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446IJA8 | 0.0 | A0A446IJA8_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AS_02E068C7E.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4921 | 6 | 9 |
Publications ? help Back to Top | |||
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