PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_FF8F7A939.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 181aa    MW: 20472.1 Da    PI: 9.5068
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_FF8F7A939.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45e-112972447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           WT +E++l++++   +G g+Wk I++++ +++t  q+ s+ qky
  Traes_1AL_FF8F7A939.1 29 WTIDEHKLFLRGLGVYGRGDWKNISKHFVTTKTHVQVSSHAQKY 72
                           *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0042177IPR017930Myb domain
SuperFamilySSF466891.33E-152378IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-92482IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-132575IPR006447Myb domain, plants
SMARTSM007171.2E-62575IPR001005SANT/Myb domain
CDDcd001674.13E-72973No hitNo description
PfamPF002492.3E-82972IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVDKNKMQIL ENNITSDQLV VPPRQGRFWT IDEHKLFLRG LGVYGRGDWK NISKHFVTTK  60
THVQVSSHAQ KYFRRLHKRA SFGTQRYSIN DVGLHDEDPW SMNNSSGPLQ MLGSTGLNNE  120
TSFGLQAPIS SSIVMNNQPQ LWPPFIYSHQ INQQPVWSEH HMLGSTGVVT DGMGNSAPPC  180
Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169909.13e-72uncharacterized protein LOC109755402
TrEMBLA0A3B5Y5E41e-132A0A3B5Y5E4_WHEAT; Uncharacterized protein
STRINGTraes_1AL_FF8F7A939.11e-133(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-19MYB family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]