PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AL_FB0C83DD9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 231aa MW: 25019.2 Da PI: 5.006 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 128.1 | 1e-39 | 7 | 228 | 159 | 373 |
GRAS 159 eetgerLakfAeelgvpfefnvl................vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL 228 ee+g rLa+fA++ gv++efnv+ ++++l+++ ++ +Lr++ gEal+Vn++ l ++ + rd ++ Traes_1AL_FB0C83DD9.1 7 EEIGLRLANFAKSKGVRLEFNVVnkstatsspsptklqtLCQELACVlsDPPALRLRDGEALVVNCQSWLRHVA------PGSRDGFV 88 689*******************988888777777666655555555566788889999************9998......445778** PP GRAS 229 klvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 ++v+ l P +v+v++++ad++s+s+++r++ ++++++ lfd+l++++p++s r E++ +g++i++vv + g+e r e+ ++ Traes_1AL_FB0C83DD9.1 89 DAVRALDPCLVTVTDEDADLDSPSLATRIAGCFNFHWILFDALDTSAPSDSPRRLEHEAA-VGQKIESVVGADGTE---RSESGARLA 172 **********************************************************99.**************9...677777888 PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 er+++ GF v ++e++++++++ll++++ g+ v+ e++ lvl+Wk+++ v+++aW Traes_1AL_FB0C83DD9.1 173 ERMRRKGFAGVGFGEDEVAEVRHLLSEHA-TGWGVKREEDMLVLTWKGHAAVFTTAW 228 9****************************.99************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.611 | 1 | 210 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-37 | 7 | 228 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence Send to blast |
LLGVPDEEIG LRLANFAKSK GVRLEFNVVN KSTATSSPSP TKLQTLCQEL ACVLSDPPAL 60 RLRDGEALVV NCQSWLRHVA PGSRDGFVDA VRALDPCLVT VTDEDADLDS PSLATRIAGC 120 FNFHWILFDA LDTSAPSDSP RRLEHEAAVG QKIESVVGAD GTERSESGAR LAERMRRKGF 180 AGVGFGEDEV AEVRHLLSEH ATGWGVKREE DMLVLTWKGH AAVFTTAWAP N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 2e-19 | 7 | 231 | 253 | 475 | Protein SHORT-ROOT |
5b3h_B | 1e-19 | 7 | 231 | 199 | 421 | Protein SHORT-ROOT |
5b3h_E | 1e-19 | 7 | 231 | 199 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154951.1 | 1e-160 | scarecrow-like protein 32 | ||||
TrEMBL | A0A3B5Y3P3 | 1e-164 | A0A3B5Y3P3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_FB0C83DD9.1 | 1e-168 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12227 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49950.1 | 3e-49 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|