PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_F8054064A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 183aa MW: 21200.3 Da PI: 9.6978 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38.7 | 3.3e-12 | 11 | 60 | 39 | 90 |
FAR1 39 gkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 g r+e+k++ ek + +r+etr+gC+a++k++++ +g ++v+++++ HnH+la Traes_1AL_F8054064A.1 11 GVRAEDKRE-EKFSYSRPETRCGCDARMKISLN-NGIYYVYEFKEAHNHSLA 60 556666666.88899******************.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-8 | 15 | 60 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MGLRKLLELI GVRAEDKREE KFSYSRPETR CGCDARMKIS LNNGIYYVYE FKEAHNHSLA 60 TGNMSQYLRS HRKVTEAQLA NAEAAKSVGI SNKATIDLMT KEACGPENLG FISTDMKNRL 120 YSKRTLKAKV GDTGGVLEYM EKKVSEDVKF FYRNYLANDT RWPIWRRHYI QWLCYSLSSA 180 WMV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 3e-45 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683537.1 | 3e-61 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | T1NVU6 | 2e-92 | T1NVU6_TRIUA; Uncharacterized protein | ||||
STRING | Traes_1AL_F8054064A.1 | 1e-136 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-12 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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