PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_C76BCC7EC.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 255aa    MW: 28316.6 Da    PI: 8.3496
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_C76BCC7EC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.61.3e-4141361128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                            lppG+rF Pt+eelv +yL++ ++g++  ++e+vi+ +d+++++Pw+Lp+    +++++ + w++F+ r+ ++a+g r++r+t sgyW
  Traes_1AL_C76BCC7EC.1   4 LPPGYRFYPTEEELVRFYLRHMLDGRRrGDIERVIPVADVCSLDPWQLPEvhrgACAGHGEPWFYFCARQDREARGGRPSRTTPSGYW 91 
                            79***********************996677789**************95456544557889************************** PP

                    NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ka g+   v+s++g  vg+kkt+vfy+grap g kt+W m+eyr+
  Traes_1AL_C76BCC7EC.1  92 KAAGTPGLVYSAGGCPVGTKKTMVFYRGRAPAGAKTKWKMNEYRA 136
                            *******************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-483163IPR003441NAC domain
PROSITE profilePS5100546.9634164IPR003441NAC domain
PfamPF023651.3E-225135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGELPPGYRF YPTEEELVRF YLRHMLDGRR RGDIERVIPV ADVCSLDPWQ LPEVHRGACA  60
GHGEPWFYFC ARQDREARGG RPSRTTPSGY WKAAGTPGLV YSAGGCPVGT KKTMVFYRGR  120
APAGAKTKWK MNEYRAFDDD GADADAAARL QVRSEFSLCR LYTRSGSLRQ FDRRPCTVAA  180
GGRRSEDPAS PSAAPASASE DVEVGKGQKR KRHAANDVPS SSDAYRSVQQ QQKQGGADEE  240
LVDGMTDWAE LFDWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-29416717168NO APICAL MERISTEM PROTEIN
1ut4_B5e-29416717168NO APICAL MERISTEM PROTEIN
1ut7_A5e-29416717168NO APICAL MERISTEM PROTEIN
1ut7_B5e-29416717168NO APICAL MERISTEM PROTEIN
3swm_A5e-29416720171NAC domain-containing protein 19
3swm_B5e-29416720171NAC domain-containing protein 19
3swm_C5e-29416720171NAC domain-containing protein 19
3swm_D5e-29416720171NAC domain-containing protein 19
3swp_A5e-29416720171NAC domain-containing protein 19
3swp_B5e-29416720171NAC domain-containing protein 19
3swp_C5e-29416720171NAC domain-containing protein 19
3swp_D5e-29416720171NAC domain-containing protein 19
4dul_A5e-29416717168NAC domain-containing protein 19
4dul_B5e-29416717168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3599540.0AK359954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1107F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158921.11e-160NAC domain-containing protein 90-like
SwissprotQ9FMR31e-65NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A3B5Y2640.0A0A3B5Y264_WHEAT; Uncharacterized protein
TrEMBLA0A446J4200.0A0A446J420_TRITD; Uncharacterized protein
STRINGTraes_1AL_C76BCC7EC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-65NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]