PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_C54DD97DE.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 1221aa MW: 134620 Da PI: 4.5611

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_C54DD97DE.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.6	1.4e-10	569	615	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 f + e+L+++F ++yp+++ +e LA++lgLt rqV WF R Traes_1AL_C54DD97DE.2 569 HFGPVINERLNQYFTTDQYPTRAVKESLAQELGLTFRQVNKWFESTR 615 566666789**********************************8766 PP
2	Homeobox	35.8	1.4e-11	1050	1090	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++L e F+ n+yps++ +e LA++lgLt rqV WF rR Traes_1AL_C54DD97DE.2 1050 QRLHEQFKTNQYPSRAVKESLAQELGLTFRQVEKWFESRRR 1090 6899***********************************96 PP
3	PHD	38.7	2.3e-13	227	282	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k Traes_1AL_C54DD97DE.2 227 VCATCSLqdVTLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 282 5999998544459*****66*****************999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	1.93E-13	218	285	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.3E-12	224	281	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.825	225	282	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	6.97E-25	227	279	No hit	No description
SMART	SM00249	2.5E-10	227	280	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	228	279	IPR019786	Zinc finger, PHD-type, conserved site
Pfam	PF00628	2.3E-10	228	282	IPR019787	Zinc finger, PHD-finger
SuperFamily	SSF46689	8.13E-11	558	616	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-12	558	615	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.183	561	621	IPR001356	Homeobox domain
SMART	SM00389	2.0E-9	563	625	IPR001356	Homeobox domain
CDD	cd00086	1.14E-10	564	615	No hit	No description
Pfam	PF00046	6.0E-8	568	615	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.204	1035	1095	IPR001356	Homeobox domain
SMART	SM00389	2.1E-10	1038	1099	IPR001356	Homeobox domain
CDD	cd00086	5.01E-12	1040	1093	No hit	No description
SuperFamily	SSF46689	1.41E-11	1044	1101	IPR009057	Homeodomain-like
Pfam	PF00046	5.7E-9	1050	1090	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.9E-12	1050	1104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1221 aa Download sequence Send to blast
MDKSNTSGCA AEDIIETRNY ANSSLNPEAL KHQSFPFPYT SLSGERKNFK RAANRGKKGS 60 RVLSSRTYPL KSSESTVRVL RSRSVADKSP SDAVQTSTER AAKKPPSDSV DTLVKPAAKR 120 IKRDRDRPTK GGPDDELSKI RKRIRYILNR MNYHQSFLEA YASEGWKNQS LEKIRPEKEL 180 ERAKAEIVRC KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT CSLQDVTLNN 240 DIILCDGACD RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN ELQGTDLDIN 300 DSWEKVFPEA AAVAHGPMQN DVADLPSDDS EDDDFDPNIP EEHVAGHAEG SSEEDGDEGS 360 DSDDSNFMTS SDNSEHVKEK EKVDDLGLPS EDSEDDDYDP AGPDSDKDIE EKQDESDFTS 420 DSDDFCAEIM KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHTKDLEI DQDVILPSTK 480 RQVQRLDYKK LYDDTYGEAP SESSDGDDWS GKSTLKEDNE EGNEVDSFAR KSPRGTRVVH 540 PDGFHGLVNE QHAGGLTSDG SNSKAKKRHF GPVINERLNQ YFTTDQYPTR AVKESLAQEL 600 GLTFRQVNKW FESTRHARAA AMKNGAQLEK HSNSRKKKSS DQPNACKEEG IRQDSPVKQE 660 TDGGQRAHMP PESSQSYTKT SGLAGCPKSE SRENHEKNTP LKYVGMPTDG SAEDQILGLE 720 PEDDGSDSDD PNFAIRSGNS EPSKNREKVD DLGLPSAYSE DDDYDSDEVI EMMQSSSDES 780 DSNESNFTTS SDNPEDVKEK VDDIGLPSED SEDDDYDPAG PGSHEDIGKN QSSSDKSHSS 840 DKSENRKTKR KADDLGLPSE DSEDDDYDPA SPDSDKDIEE KQDESDFSSD CDDFCVEIAK 900 SCCGQEGVPS GAKVGGDRTD DLEGTTICAN AAISNLPSKD PEMDQYVVLP VSARQKVQSP 960 DSKKLAQAYG KASSDSSYGE ELSKKCTPEK DNGKESEAGS FVRQSNEFTP QRSQQSFHGS 1020 VNGQNAEELL TPNGSSTTGQ KRQYGPIINQ RLHEQFKTNQ YPSRAVKESL AQELGLTFRQ 1080 VEKWFESRRR HIRVASNKSS THVENHSTKE NPNVCKRDAV NEDTPSGSLN EGITQDGPLK 1140 QNIGGGLRTN ASPPNSSQRY TTPLVRRPKG ESRENHMKNT SSSSAGRPKG SDAGYAVLAL 1200 EALDEKTRSK MLQELKKRKI G

Sequence ? help Back to Top

Protein Sequence Length: 1221 aa Download sequence Send to blast

MDKSNTSGCA AEDIIETRNY ANSSLNPEAL KHQSFPFPYT SLSGERKNFK RAANRGKKGS  60
RVLSSRTYPL KSSESTVRVL RSRSVADKSP SDAVQTSTER AAKKPPSDSV DTLVKPAAKR  120
IKRDRDRPTK GGPDDELSKI RKRIRYILNR MNYHQSFLEA YASEGWKNQS LEKIRPEKEL  180
ERAKAEIVRC KLRIREAFQN LDHLLTVGKL EESLFDSEGK ISSDDIVCAT CSLQDVTLNN  240
DIILCDGACD RGFHQNCLNP PLLTKDIPEG EEGWLCPACD CKIDCIELIN ELQGTDLDIN  300
DSWEKVFPEA AAVAHGPMQN DVADLPSDDS EDDDFDPNIP EEHVAGHAEG SSEEDGDEGS  360
DSDDSNFMTS SDNSEHVKEK EKVDDLGLPS EDSEDDDYDP AGPDSDKDIE EKQDESDFTS  420
DSDDFCAEIM KSCSKDEVSS GPKVGGRTND LEGAPVRPNT SMSHTKDLEI DQDVILPSTK  480
RQVQRLDYKK LYDDTYGEAP SESSDGDDWS GKSTLKEDNE EGNEVDSFAR KSPRGTRVVH  540
PDGFHGLVNE QHAGGLTSDG SNSKAKKRHF GPVINERLNQ YFTTDQYPTR AVKESLAQEL  600
GLTFRQVNKW FESTRHARAA AMKNGAQLEK HSNSRKKKSS DQPNACKEEG IRQDSPVKQE  660
TDGGQRAHMP PESSQSYTKT SGLAGCPKSE SRENHEKNTP LKYVGMPTDG SAEDQILGLE  720
PEDDGSDSDD PNFAIRSGNS EPSKNREKVD DLGLPSAYSE DDDYDSDEVI EMMQSSSDES  780
DSNESNFTTS SDNPEDVKEK VDDIGLPSED SEDDDYDPAG PGSHEDIGKN QSSSDKSHSS  840
DKSENRKTKR KADDLGLPSE DSEDDDYDPA SPDSDKDIEE KQDESDFSSD CDDFCVEIAK  900
SCCGQEGVPS GAKVGGDRTD DLEGTTICAN AAISNLPSKD PEMDQYVVLP VSARQKVQSP  960
DSKKLAQAYG KASSDSSYGE ELSKKCTPEK DNGKESEAGS FVRQSNEFTP QRSQQSFHGS  1020
VNGQNAEELL TPNGSSTTGQ KRQYGPIINQ RLHEQFKTNQ YPSRAVKESL AQELGLTFRQ  1080
VEKWFESRRR HIRVASNKSS THVENHSTKE NPNVCKRDAV NEDTPSGSLN EGITQDGPLK  1140
QNIGGGLRTN ASPPNSSQRY TTPLVRRPKG ESRENHMKNT SSSSAGRPKG SDAGYAVLAL  1200
EALDEKTRSK MLQELKKRKI G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	138	144	KIRKRIR

Functional Description ? help Back to Top
Source	Description
UniProt	Interacts with the shrunken (SHR) 26 bp feedback control element.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368628	0.0	AK368628.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077C19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020161929.1	0.0	homeobox protein HOX1A-like
Swissprot	P46605	0.0	HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBL	A0A3B5Y4B0	0.0	A0A3B5Y4B0_WHEAT; Uncharacterized protein
STRING	Traes_1AL_C54DD97DE.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-76	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Bellmann R,Werr W Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element. EMBO J., 1992. 11(9): p. 3367-74 [PMID:1354614] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]