PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_B68E59AAB.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 151aa MW: 16964.4 Da PI: 10.4409 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.6e-16 | 42 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l +vk++G +W+ + + g+ R++k+c++rw ++l Traes_1AL_B68E59AAB.2 42 KGPWTPAEDAILEAYVKKHGVQNWNVVQKDTGLLRCGKSCRLRWANHL 89 79******************************99**********9996 PP | |||||||
2 | Myb_DNA-binding | 25.6 | 2.9e-08 | 95 | 126 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 +g +T+eE+ l+++++ ++G++ W++ a+++ Traes_1AL_B68E59AAB.2 95 KGTFTKEEENLIIKLHSKMGNK-WARMAARVS-S 126 799*******************.*****9987.5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.81 | 37 | 93 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 38 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-13 | 41 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 42 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.59E-24 | 43 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.48E-10 | 44 | 89 | No hit | No description |
PROSITE profile | PS50090 | 6.725 | 90 | 131 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-14 | 93 | 124 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2 | 94 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-7 | 95 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00233 | 97 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MTRAKSESDR VMPGPDQVDL ASHDDDSARE SPRRRAGPQL KKGPWTPAED AILEAYVKKH 60 GVQNWNVVQK DTGLLRCGKS CRLRWANHLR PDLKKGTFTK EEENLIIKLH SKMGNKWARM 120 AARVSSLSSS CFSGSAFIKF CSHASLMRVD I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-20 | 38 | 121 | 3 | 85 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951900 | 0.0 | JF951900.1 Triticum aestivum clone TaMYB15 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181615.1 | 2e-81 | transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_020181616.1 | 2e-81 | transcription factor GAMYB-like isoform X1 | ||||
Refseq | XP_020181617.1 | 2e-81 | transcription factor GAMYB-like isoform X1 | ||||
Swissprot | A2WW87 | 1e-53 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A446J6D8 | 1e-109 | A0A446J6D8_TRITD; Uncharacterized protein | ||||
TrEMBL | A0A446J6G7 | 1e-109 | A0A446J6G7_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_B68E59AAB.2 | 1e-109 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3947 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 1e-43 | myb domain protein 101 |
Publications ? help Back to Top | |||
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