PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_B14FE48AF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 615aa MW: 67076.6 Da PI: 8.1799 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.5 | 6.8e-25 | 48 | 149 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ +++ + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F Traes_1AL_B14FE48AF.1 48 FCKTLTASDTSTHGGFSVPRRAAEDCfapldyKQV-RPSQELVAKDLHGTQWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLF 134 99****************************97444.34579*********************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 + +++el+++v+r+ Traes_1AL_B14FE48AF.1 135 L--RGDDGELRLGVRRA 149 *..3489999***9996 PP | |||||||
2 | Auxin_resp | 102.7 | 4.7e-34 | 174 | 255 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a++++++s+F+v++ Pr+++seF+v++++++k+l++++s+GmRfk + e++d++er+ +G+++g+s++dp+rWp+SkWr+L+ Traes_1AL_B14FE48AF.1 174 VASSLENRSIFHVCFDPRSGASEFIVPYWRFSKSLNHSFSIGMRFKDSNESDDANERS-TGLISGISEVDPIRWPGSKWRCLQ 255 578899***************************************************9.9**********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.09E-42 | 38 | 184 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-38 | 44 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.65E-22 | 46 | 148 | No hit | No description |
SMART | SM01019 | 2.9E-22 | 48 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-23 | 48 | 149 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.239 | 48 | 150 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-28 | 175 | 255 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MPFIALCKCS SSVLQMFRQN VRESASEEGE DGMAGGDGEK KPRMPHMFCK TLTASDTSTH 60 GGFSVPRRAA EDCFAPLDYK QVRPSQELVA KDLHGTQWRF RHIYRGQPRR HLLTTGWSSF 120 VNKKKLVSGD AVLFLRGDDG ELRLGVRRAV QLRNEALFKA VNSNESKLHT LSAVASSLEN 180 RSIFHVCFDP RSGASEFIVP YWRFSKSLNH SFSIGMRFKD SNESDDANER STGLISGISE 240 VDPIRWPGSK WRCLQVRWDD GNHCNHQRRV SPWEIERVGG SISVTDCLSA SSSKRAKLYF 300 PQGNLDAPVT DGNGYPDSVE TGSFHRVLQG QELLMGSRAH GAARSQSPDV AKFRTPDHQR 360 FSANARSYIP QQSPVEFPYH SSGFGESLRF PEVLQGQEMS QALRFYQGTA FDARAQHGGV 420 VGPFGYAQRS AAPGGLSPAA QGYALGQFTP SAAAAAKVSS PSSVLMFNQA TVPQFDLEGR 480 ASSYRGAYGG QCPPAMEMAR ETEEAWPCAQ RRTPSVTGTG XXXXXXXXXX XXXXXXXXXX 540 XXAAGDVVGR SNCRLFGFSL TDQKVLGGAG EGDAKEGDAD DVVAECADPR VLDLFGRGHP 600 APGALHAIVA APLGM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-74 | 38 | 276 | 150 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357487 | 0.0 | AK357487.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1054I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188126.1 | 0.0 | auxin response factor 14-like | ||||
Swissprot | Q0DGS1 | 0.0 | ARFN_ORYSJ; Auxin response factor 14 | ||||
TrEMBL | A0A446J869 | 0.0 | A0A446J869_TRITD; Auxin response factor | ||||
STRING | Traes_1AL_B14FE48AF.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-122 | ARF family protein |
Publications ? help Back to Top | |||
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