PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_A4B5C1474.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 368aa    MW: 41699.4 Da    PI: 4.737
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_A4B5C1474.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34521432102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y+++ed+++++++sw + gn+fvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g
  Traes_1AL_A4B5C1474.2  52 FLTKTYDLVEDPATDQVVSWGRAGNTFVVWDPHVFAEALLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 130
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +++ll++ikr+k 
  Traes_1AL_A4B5C1474.2 131 QRHLLKTIKRRKP 143
                            **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.71E-3548141IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.2E-5948141IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.7E-3848141IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-195275IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3152141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434091115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-19103115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDAMPPEGIV KEEEVLLHEE RTHPAAAPPQ QRQDGALPRP MEGLHEAGPP PFLTKTYDLV  60
EDPATDQVVS WGRAGNTFVV WDPHVFAEAL LPRLFKHSNF SSFVRQLNTY GFRKVDPDRW  120
EFANEGFLRG QRHLLKTIKR RKPPSNAPSS QQQALTSCLE VGEFGFEEEI DRLKRDKNLL  180
ITEVVKLRQE QQATKDNVQA MEGRLRAAEQ RQAQMMGFLA RAMRNPHFFQ QLVQKQDKRK  240
ELEDAISKKR RRPIDNAPFY GSGATTSQSE QLDSQFLFDS GVLSEPGMNG MENLAQNIQE  300
LGQGKTDEEK KDEANGQLDI NSDFWAELFS DDFGDEDGSG LSELEGRRPE DIDELGQQLG  360
YLSSTSPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-254714112120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140LKTIKRR
2237251KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU2913940.0KU291394.1 Triticum aestivum heat shock transcription factor A6e mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147337.10.0heat stress transcription factor A-2c-like isoform X1
RefseqXP_020147338.10.0heat stress transcription factor A-2c-like isoform X1
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLW4ZRM40.0W4ZRM4_WHEAT; Heat shock transcription factor A6e
STRINGTraes_1AL_A4B5C1474.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-110heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]