PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_914726769.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 462aa    MW: 49254.5 Da    PI: 5.9415
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_914726769.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-15266311555
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hne Er+RRdriN+++++L++l+P++      K +Ka++L ++++++k+Lq
  Traes_1AL_914726769.1 266 HNESERKRRDRINQKMQTLQKLVPNS-----SKTDKASMLDEVIDHLKELQ 311
                            *************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.542261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-19264336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-17266322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.46E-17266315No hitNo description
PfamPF000105.4E-13266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MNNQCVPSWD LDETVSAGLN XSAGSTQRMA PGDSGLTGPV AMPMPDQYDE VAELTWEKGN  60
IFWQGLLNRS VPKYPAAPPP AQMHAIGGAG DHRETLEAVV GEAAARLSSQ STSHLGQPLP  120
AAAAPWLGVG APADGLVPCA RVDEPAEGDV RRKRARVVGE DGRVCASQGS VAPGRGESSL  180
LTLEPCGTGA DDLCGFTTTN NSTSLDHGSP ETENTSFGGG ASDSRCFSRR SQRDGLCDEA  240
ENVVIKGEAP MRSSISTKRS RAAAIHNESE RKRRDRINQK MQTLQKLVPN SSKTDKASML  300
DEVIDHLKEL QATVQMMNRM SSMMMPMAMP QLAQMSVMAN MAQMAQMAQM GLGMINMAGP  360
LAQPAYPGLT QPMMHTSTPF VTMQPWNAGA GADRQKQPAA AAVPDAYSAF LACQAAQQNA  420
QESLLLLLQQ QAQPNGMEAY SRMMAMCQKL SQQQTKPGSS KE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269274ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678140.0AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164230.10.0transcription factor UNE10 isoform X1
RefseqXP_020164233.10.0transcription factor UNE10 isoform X2
TrEMBLA0A446IZB20.0A0A446IZB2_TRITD; Uncharacterized protein
STRINGTraes_1AL_914726769.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-36bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]