PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_914726769.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 462aa MW: 49254.5 Da PI: 5.9415 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.4 | 1.7e-15 | 266 | 311 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne Er+RRdriN+++++L++l+P++ K +Ka++L ++++++k+Lq Traes_1AL_914726769.1 266 HNESERKRRDRINQKMQTLQKLVPNS-----SKTDKASMLDEVIDHLKELQ 311 *************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.542 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.9E-19 | 264 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.9E-17 | 266 | 322 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.46E-17 | 266 | 315 | No hit | No description |
Pfam | PF00010 | 5.4E-13 | 266 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-17 | 267 | 316 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MNNQCVPSWD LDETVSAGLN XSAGSTQRMA PGDSGLTGPV AMPMPDQYDE VAELTWEKGN 60 IFWQGLLNRS VPKYPAAPPP AQMHAIGGAG DHRETLEAVV GEAAARLSSQ STSHLGQPLP 120 AAAAPWLGVG APADGLVPCA RVDEPAEGDV RRKRARVVGE DGRVCASQGS VAPGRGESSL 180 LTLEPCGTGA DDLCGFTTTN NSTSLDHGSP ETENTSFGGG ASDSRCFSRR SQRDGLCDEA 240 ENVVIKGEAP MRSSISTKRS RAAAIHNESE RKRRDRINQK MQTLQKLVPN SSKTDKASML 300 DEVIDHLKEL QATVQMMNRM SSMMMPMAMP QLAQMSVMAN MAQMAQMAQM GLGMINMAGP 360 LAQPAYPGLT QPMMHTSTPF VTMQPWNAGA GADRQKQPAA AAVPDAYSAF LACQAAQQNA 420 QESLLLLLQQ QAQPNGMEAY SRMMAMCQKL SQQQTKPGSS KE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 269 | 274 | ERKRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367814 | 0.0 | AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164230.1 | 0.0 | transcription factor UNE10 isoform X1 | ||||
Refseq | XP_020164233.1 | 0.0 | transcription factor UNE10 isoform X2 | ||||
TrEMBL | A0A446IZB2 | 0.0 | A0A446IZB2_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_914726769.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7474 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 2e-36 | bHLH family protein |
Publications ? help Back to Top | |||
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