PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AL_8BC434C02.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | STAT | ||||||||
Protein Properties | Length: 709aa MW: 77688.9 Da PI: 5.5214 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 186.3 | 3.8e-58 | 233 | 354 | 1 | 121 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikf 87 l+vvl+na+g+ ++kd+++vasL+yad+g++veks ddae+pLLi+++G+e+++e+rpl++lrGra+fklkisqLsskcdn+Lfri+f Traes_1AL_8BC434C02.2 233 LEVVLTNAFGEHMNKDTQIVASLVYADNGALVEKSrDDAEPPLLIACEGLEYPAESRPLPILRGRALFKLKISQLSSKCDNKLFRIYF 320 79*********************************9**************************************************** PP STAT 88 eipklkkypfleavskpirCisrsrntrsssltk 121 ++++ +kypflea skpirCisr r +r++s++k Traes_1AL_8BC434C02.2 321 STLHTRKYPFLEASSKPIRCISRGRPSRPLSAAK 354 ****************************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF49899 | 8.06E-7 | 39 | 193 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
SuperFamily | SSF55550 | 4.83E-8 | 607 | 689 | IPR000980 | SH2 domain |
Gene3D | G3DSA:3.30.505.10 | 6.6E-4 | 607 | 675 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 10.449 | 611 | 709 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 709 aa Download sequence Send to blast |
MAAPAEPGGI EGYLGLRDVR VELDLGKARG GGEGGEGAGG GFAVCFWLYL SGSARPSPVI 60 LHQITAGDGN KLPFLALSEG NKLLLFPLLS LHKQAPSSSN SSPWTDTTYI SAVNECPLEH 120 WIHIGCEVTE NVMRLHIDGD LVAEAHLCSL SSQLDNQDDA YQVCLLGNNG KVDGYVYNVQ 180 VLSMLGAIQE QYTENPPSKL SIDYSCCDGI EEGDDGIWCI VGGKASCRRN FMLEVVLTNA 240 FGEHMNKDTQ IVASLVYADN GALVEKSRDD AEPPLLIACE GLEYPAESRP LPILRGRALF 300 KLKISQLSSK CDNKLFRIYF STLHTRKYPF LEASSKPIRC ISRGRPSRPL SAAKRTSSAT 360 VDEIHLFNNG QGLDRDGKAN SCSLSHDQSS VACLHPSKFL KVEGDGTETH KMVSQSKQAR 420 KMVVEAQSVR TESTMSDSDS IDARSSWSGS DKDEAETLSD AMIFRYCLEG TYERSTFLKS 480 AASSIIVDDL ITLANEVSLY SGCSHHRNQI LISKQLLEEG AVTWSIISKN KERALWSSAV 540 PEIMSKFMDI AHSTNRGLSE QDLEVLKGIA GCGADLGRNE FDRLWYWLYP VAVSLSKDKI 600 NSLWGCTAPA WIEGLITTEE AENALRSSRE LLKKPGTFVL RFPTTRSWPH PDAGSLVVTY 660 VGSDNSIHHR LLSLDVSDAR AGSLQDLLLQ EPELLQLGRV DRLPTAMKY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194163.1 | 0.0 | uncharacterized protein LOC109779975 isoform X2 | ||||
TrEMBL | A0A3B5Y179 | 0.0 | A0A3B5Y179_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_8BC434C02.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7547 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78540.1 | 1e-149 | SH2 domain protein B |
Publications ? help Back to Top | |||
---|---|---|---|
|