PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_7D8C62AA4.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | YABBY | ||||||||
Protein Properties | Length: 221aa MW: 23275.4 Da PI: 8.3214 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 81.6 | 2.3e-25 | 41 | 98 | 4 | 61 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 seq+Cyv+C fC+t+l+vsvPs+slfk+vtvrCGhC+sll+v+++ ++++ Traes_1AL_7D8C62AA4.1 41 EAPSEQLCYVHCHFCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVDMRGLLFPTTTTT 98 5689******************************************998775554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.6E-25 | 43 | 102 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MSSSSSSGAS AAFTPVSQQQ QQMAPESLSS ELQPPAPMQP EAPSEQLCYV HCHFCDTVLV 60 VSVPSSSLFK TVTVRCGHCS SLLTVDMRGL LFPTTTTTVA AESAASAVTT TTSPPPAAAA 120 HHGQFHYPSS LNLAPGNPPR HSLLDEISSA NPSLQLLEQH GLGGLIAXXX XXXXXXXXCR 180 HPQSPGGKVG RSHHHGPIPS STDLRRRGSA CRRRTTASSS K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY330228 | 0.0 | AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178920.1 | 8e-92 | protein YABBY 3-like | ||||
Swissprot | Q8L556 | 7e-34 | YAB3_ORYSJ; Protein YABBY 3 | ||||
TrEMBL | A0A3B5ZT37 | 2e-90 | A0A3B5ZT37_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A452YJ07 | 2e-90 | A0A452YJ07_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1AL_7D8C62AA4.1 | 1e-146 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22855 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 6e-14 | YABBY family protein |
Publications ? help Back to Top | |||
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