PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_79B8C6F15.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TCP
Protein Properties Length: 306aa    MW: 32939.8 Da    PI: 7.2716
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_79B8C6F15.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.13.9e-31501653115
                    TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.. 88 
                            g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++++++ +        sa++++++  
  Traes_1AL_79B8C6F15.1  50 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAQHEIDKLPPLQFPPHDDD----LLLSAHHHHHHlq 133
                            78******************************************************************333....3333333333333 PP

                    TCP  89 .....kaaksaakskksqksaasalnlakesr 115
                                  +++  ++ +++++ aas+  ++ ++ 
  Traes_1AL_79B8C6F15.1 134 ptssmTSMAMVPPFSHATAAAASMMVVDSDKA 165
                            33211333333333333333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.15351109IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-2751149IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MISAGDHGND RRKFEPAAAG NKALQAAAAA SRHWSASTES RIVRVSRVFG GKDRHSKVRT  60
VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLN AAQHEIDKLP PLQFPPHDDD  120
LLLSAHHHHH HLQPTSSMTS MAMVPPFSHA TAAAASMMVV DSDKAAQAHD GGGDLKGFMS  180
LSNSLGLVNG AGASMPTLAA AQAGSYHHHY AAHEAWSNGG NNVQEQLGGH RSSPHVVPHH  240
GLPFPSLLSL APVSQFVFYT PEGGFAMKDV ASDDQFPVDN LDDSQGQLSL SSRGEAFFTQ  300
EARVDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2056110155Putative transcription factor PCF6
5zkt_B6e-2056110155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3593590.0AK359359.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961521.12e-92transcription factor TCP13 isoform X1
RefseqXP_004961522.12e-92transcription factor TCP13 isoform X1
RefseqXP_012700333.12e-92transcription factor TCP13 isoform X1
TrEMBLA0A446J8730.0A0A446J873_TRITD; Uncharacterized protein
STRINGTraes_1AL_79B8C6F15.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.16e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]