PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_6EE3AB1BA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 282aa    MW: 31001.3 Da    PI: 6.0836
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_6EE3AB1BA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.86.6e-17170251191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fY+++A  +GF vr+ +++++      +k ++ C+++gk +++++   k++r+++     C+ak+ vk++ +++we + +++eHnH+
  Traes_1AL_6EE3AB1BA.1 170 RFYSTHAMLTGFAVRRGSNYRR------VKFDLECNRSGKLKPTEDL--KRKRRSNALGSRCQAKVIVKLH-NEQWEFIGVKHEHNHP 248
                            5********************9......7889***********9988..555555566789*********9.9*************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_1AL_6EE3AB1BA.1 249 LCP 251
                            *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-14170251IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQAAADNLGE QAPGPVPATN SEQIAMTYPD RAVEPNHSVA EVHLEKENVG KQAMPGGGLQ  60
LTGGNDQEHA SNGIGTAAQG LLADISDKQS NSVDPGMQQH AEEQDQLHGV TQGHEMSSND  120
TSSGSDSGSS SGSELDTELG KCFYPSFEEL ENSRPPEIGM RFPTLEDAER FYSTHAMLTG  180
FAVRRGSNYR RVKFDLECNR SGKLKPTEDL KRKRRSNALG SRCQAKVIVK LHNEQWEFIG  240
VKHEHNHPLC PSPSLASFFL NHKYLSSEEK LFLRVLQQSR VN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178460.11e-146protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A287GC931e-164A0A287GC93_HORVV; Uncharacterized protein
TrEMBLA0A287GC971e-167A0A287GC97_HORVV; Uncharacterized protein
TrEMBLA0A287GCD81e-164A0A287GCD8_HORVV; Uncharacterized protein
STRINGTraes_1AL_6EE3AB1BA.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.14e-09FAR1-related sequence 8
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]