PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_501B5BEAE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 149aa MW: 16593 Da PI: 9.2823 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 49.8 | 5.6e-16 | 74 | 99 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg Traes_1AL_501B5BEAE.1 74 FKTELCNKWEETGACPYGDQCQFAHG 99 79***********************8 PP | |||||||
2 | zf-CCCH | 18.2 | 4.5e-06 | 112 | 137 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 ykt Cr + G +C+yG rC+F H+ Traes_1AL_501B5BEAE.1 112 YKTQVCR--MVIGgaICPYGHRCHFRHS 137 8999999..999999**********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-19 | 69 | 105 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-11 | 71 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-9 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.863 | 73 | 101 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-13 | 74 | 99 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-11 | 106 | 138 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-8 | 107 | 139 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-4 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.92 | 111 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MPKSISIRSN GYLKMDRNGK HRVTAPVNVG SQRVFVGVDG AKAEEHQGRG GEKGGQVATA 60 ADRLQFEVYS QGMFKTELCN KWEETGACPY GDQCQFAHGI AELRPIIRHP RYKTQVCRMV 120 IGGAICPYGH RCHFRHSITP ADYIPLLHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 1e-22 | 74 | 137 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC098571 | 6e-95 | AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence. | |||
GenBank | AC098832 | 6e-95 | AC098832.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1268_B08, complete sequence. | |||
GenBank | AK106354 | 6e-95 | AK106354.1 Oryza sativa Japonica Group cDNA clone:002-102-A03, full insert sequence. | |||
GenBank | AP014961 | 6e-95 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 6e-95 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179184.1 | 5e-95 | zinc finger CCCH domain-containing protein 39-like | ||||
Swissprot | Q6L5G1 | 7e-74 | C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A3B5Y6N7 | 1e-104 | A0A3B5Y6N7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_501B5BEAE.1 | 1e-109 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-50 | C3H family protein |
Publications ? help Back to Top | |||
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