PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_43D709979.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 177aa    MW: 19943.8 Da    PI: 10.8066
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_43D709979.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.62.1e-21100153155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r++Wt eLH++Fvea ++L  +  A+Pk+il+lm+   Lt+e+++SHLQk+R+
  Traes_1AL_43D709979.1 100 KARVVWTDELHKKFVEAHDKL-LPGDAVPKKILKLMNDSTLTRENIASHLQKHRM 153
                            68*******************.8999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.71497156IPR017930Myb domain
SuperFamilySSF466895.91E-1798155IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2298154IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-19100153IPR006447Myb domain, plants
PfamPF002493.6E-8102152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSKTGVRYGP IVMEDLNRIR EGIYNKASNG FESLEATLNS SCNNTSVMTM PTTTTLLISG  60
RRATRRRVRM TQVSDSNSQQ ELDGGSVKNE QQNPAEKPKK ARVVWTDELH KKFVEAHDKL  120
LPGDAVPKKI LKLMNDSTLT RENIASHLQK HRMNIDPLRR GNPKTKHQKL TPPQASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-1599155460ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B5Z5R62e-71A0A3B5Z5R6_WHEAT; Uncharacterized protein
STRINGTraes_1AL_43D709979.11e-129(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2089145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.18e-18G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]