PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_323AE5FA3.4
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 135aa    MW: 13885.7 Da    PI: 9.2321
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_323AE5FA3.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC87.91e-27211091897
                  NF-YC  18 nhelPlarikkilkade.d........vkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                             h+lPlarikki+k    d         +mis eaPv++s+acelf+ elt  +w  + e +rrt++  d+aaav  td fdflvd+v
  Traes_1AL_323AE5FA3.4  21 PHALPLARIKKIMKRSAgDgsggygagARMISGEAPVVFSRACELFVAELTQAAWAATLEGRRRTVHAEDVAAAVRDTDLFDFLVDVV 108
                            599***********753212222333389*********************************************************98 PP

                  NF-YC  97 p 97 
                             
  Traes_1AL_323AE5FA3.4 109 K 109
                            5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.3E-291896IPR009072Histone-fold
SuperFamilySSF471133.02E-2218104IPR009072Histone-fold
PfamPF008081.4E-152495IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MRISRPYSGV SRSGATARTG PHALPLARIK KIMKRSAGDG SGGYGAGARM ISGEAPVVFS  60
RACELFVAEL TQAAWAATLE GRRRTVHAED VAAAVRDTDL FDFLVDVVKP RPGDDGVGDG  120
VGLAPAAGVH GGALD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-29221111695NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323451e-83AL732345.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence.
GenBankCP0126121e-83CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150478.18e-70nuclear transcription factor Y subunit C-3-like
SwissprotQ655V51e-28NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A3B5Y5B09e-90A0A3B5Y5B0_WHEAT; Uncharacterized protein
TrEMBLA0A446J9L99e-90A0A446J9L9_TRITD; Uncharacterized protein
STRINGTraes_1AL_323AE5FA3.42e-90(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116583339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.34e-21nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]