PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_2CFFBD60E.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 407aa    MW: 45599.9 Da    PI: 6.8306
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_2CFFBD60E.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29e-344498155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           kprl+WtpeLH+rFv+av+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Traes_1AL_2CFFBD60E.2 44 KPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98
                           79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.38741101IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-324299IPR009057Homeodomain-like
SuperFamilySSF466898.42E-174399IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-234499IPR006447Myb domain, plants
PfamPF002497.6E-104697IPR001005SANT/Myb domain
PfamPF143792.1E-22145191IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MYHQHQGPSE LFTTRTTFPM ERHLFLHGGS TQGDSGLVLS TDAKPRLKWT PELHQRFVDA  60
VNQLGGAEKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLSK NLQAQVNVGT NKNTIGCAIA  120
ADGMPGTSVP EMINTNAIPQ PEKTMQIGEA LQMQIEVQRQ LNEQLEVQRH LQLRIEAQGK  180
YLQAVLEQAQ ESLGKQNSGP ANLEDAKMKI SELVSQVSNE CFGSGVTEIK ESSSMHRLEP  240
RQIQFMESST NNCLTAAGGF INEHRLHSHG MLKAYDDSSI FCRKHSPDHE YQFSLNRSLS  300
ERKMGHLQNV NEYHKAEFGS ESDMEIQQEY TTPQKNGRGS TASSASGSKE RDADRLYLEE  360
ANCKRQAVEH SGFEHPSSGK KIDLNTQNTD DGDQGYRHFD LNGFSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2044100157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-2043100158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181427.10.0myb-related protein 1-like isoform X1
RefseqXP_020181428.10.0myb-related protein 1-like isoform X1
TrEMBLA0A3B5Y3N10.0A0A3B5Y3N1_WHEAT; Uncharacterized protein
TrEMBLA0A446J6A20.0A0A446J6A2_TRITD; Uncharacterized protein
STRINGTraes_1AL_2CFFBD60E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122793137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.41e-96myb-related protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]