PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_29F610E15.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 291aa MW: 31406.7 Da PI: 9.9128 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 93.7 | 1.2e-29 | 30 | 126 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+kv tpsdv+k++rlv+pk++ae++ +g+ +++ l++ed+ g+ W+++++y+++s++yv+tkGW++Fvk++ L + Traes_1AL_29F610E15.1 30 FEKVVTPSDVGKLNRLVIPKQHAERYfpldgaaaalaaEGSGGKGMVLSFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKSLGA 117 99****************************999999996666799******************************************* PP T-EEEEEE- CS B3 77 gDfvvFkld 85 gD+v+F + Traes_1AL_29F610E15.1 118 GDTVLFGRG 126 ******943 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-39 | 21 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-29 | 27 | 125 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.48E-27 | 28 | 123 | No hit | No description |
Pfam | PF02362 | 2.9E-27 | 30 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.6E-22 | 30 | 144 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.648 | 30 | 144 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MEFSPTAPAG GEESERVCAS SSVVEKEHMF EKVVTPSDVG KLNRLVIPKQ HAERYFPLDG 60 AAAALAAEGS GGKGMVLSFE DRAGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKSLGAGDT 120 VLFGRGVGDG AARDRLYIDF RRRRPAESYS ATVAFPPPAT SSLSHRLPLL PSVPFCPWRR 180 DFGTTYGVPP AASGSNRHVL FLRQQVPAAV VLKSVPVRAA ASVLEPPARP MPKRVRLFGV 240 NLDSPATEDD GTCGVTQTVT STLLQQLLPS PSSSTSSTAG KERQCSLDLG L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-54 | 23 | 143 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-54 | 23 | 143 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 144 | FRRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC074196 | 6e-78 | AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 6e-78 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179425.1 | 0.0 | putative B3 domain-containing protein Os10g0537100 | ||||
Swissprot | Q8LNN8 | 2e-98 | Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100 | ||||
TrEMBL | A0A446IYE0 | 0.0 | A0A446IYE0_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_29F610E15.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 1e-46 | B3 family protein |
Publications ? help Back to Top | |||
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