PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_25726E5E7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 32569.5 Da PI: 6.1767 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 18 | 65 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ + ++G g+W++++r g++R++k+c++rw++yl Traes_1AL_25726E5E7.1 18 KGLWSPEEDEKLYSHILRYGVGCWSSVPRLAGLHRCGKSCRLRWLNYL 65 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ Traes_1AL_25726E5E7.1 71 RGTFSQEEEDHIVALHQILGNR-WSQIASHLP-GRTDNEIKNFWNS 114 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-23 | 11 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.627 | 13 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.81E-29 | 15 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 17 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 18 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.11E-11 | 21 | 65 | No hit | No description |
PROSITE profile | PS51294 | 24.794 | 66 | 120 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-26 | 69 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 71 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.56E-11 | 73 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MGRPTSGGVQ MQQPKLRKGL WSPEEDEKLY SHILRYGVGC WSSVPRLAGL HRCGKSCRLR 60 WLNYLRPDLK RGTFSQEEED HIVALHQILG NRWSQIASHL PGRTDNEIKN FWNSCIKKKL 120 RKQGIDPATH KPMAAGMITA ATAALPDAEA VDRKPLAAAA DGSLAPKQSP EFDPFPVCAD 180 YGGGFAGDLG AANATALYVQ FGDCKDGAHG DTGFGAADYS CVLDVSENLG YGESSSNSSN 240 WNYGREVGSV LDGEVLHWAK AEMERQHDEP PEHKFALPCQ EQSLLANFEF NLEQYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 14 | 120 | 3 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM066946 | 0.0 | KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158679.1 | 0.0 | myb-related protein Hv33-like | ||||
Swissprot | P20027 | 1e-155 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A3B5Y5P9 | 0.0 | A0A3B5Y5P9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_25726E5E7.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 1e-68 | myb domain protein 86 |
Publications ? help Back to Top | |||
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