PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_206AE5B76.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 662aa    MW: 74691 Da    PI: 8.7997
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_206AE5B76.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.5e-08477516339
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                             W +eE ell +a++++++g   +W+ I++ +g+gR++ +
  Traes_1AL_206AE5B76.1 477 EWGKEEVELLRKAIHKYPKGtnkRWEVISEFIGTGRSADE 516
                            7***********************************9976 PP
2Myb_DNA-binding223.9e-07605648243
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                            ++W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Traes_1AL_206AE5B76.1 605 DAWSEAQVLALVQALKAFPKDanqRWERVAAAVP-GKTVVQCKKK 648
                            58********************************.********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1109.4E-2194199IPR001623DnaJ domain
SuperFamilySSF465658.11E-2095176IPR001623DnaJ domain
SMARTSM002711.7E-1597172IPR001623DnaJ domain
CDDcd062575.13E-1398169IPR001623DnaJ domain
PfamPF002266.5E-1898177IPR001623DnaJ domain
PROSITE profilePS5007618.15198180IPR001623DnaJ domain
PRINTSPR006251.2E-8103121IPR001623DnaJ domain
PRINTSPR006251.2E-8121136IPR001623DnaJ domain
PRINTSPR006251.2E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.365470525IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.3E-6471519IPR009057Homeodomain-like
SuperFamilySSF466897.18E-8472518IPR009057Homeodomain-like
SMARTSM007171.4E-6474527IPR001005SANT/Myb domain
PfamPF002498.4E-7476517IPR001005SANT/Myb domain
SMARTSM007179.1E-6603655IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-7604649IPR009057Homeodomain-like
PfamPF002491.1E-5606648IPR001005SANT/Myb domain
CDDcd001673.28E-5606648No hitNo description
Gene3DG3DSA:1.10.10.603.5E-4606648IPR009057Homeodomain-like
PROSITE profilePS500906.086607653IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MGSKRTCLLI TYSPEIVDGV PLYVSSNCLP VKASKYEPAG HSFHAVALKL RGLDEKEDTE  60
TDDRSVSSDD KSQDFSAGSD NFSSKGKKKS GSGSQQQDHY ALLGLGNLRF LATEDQIRKS  120
YRDMALKHHP DKQAALLLHE TTEAAKQAKK DEIESHFKAI QEAYEVLMDP TKRRIFDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VTQPIPSLGD DATPVVDVDQ FYNFWYNFKS  240
WREFPHEDEY DLEQAESREH KRWMERQNAK IQEKAKKVEY TRVRNLVDNA YRKDPRIQRR  300
KEQEKAEKQR RKEAKYMAKK LQEEEAARAA EEERKRKEEE AKIAAAAADI RKKLKEKEKK  360
LLRKEKNRLR ALVGQVVGES HFSLSKEDVE TVCTSHDFEQ LKKLCDIMED KDTAEKARLL  420
RGALSKEENS SNTSKEEKIH ANGVADSTPK STVPQGTPKS TAPQVITLGN YEKKEKEWGK  480
EEVELLRKAI HKYPKGTNKR WEVISEFIGT GRSADEILKA TKTILLQKPD SAKAFDSFLE  540
KRKAAPSIVS PLSTRDETAG GSTVGTGTEP SKAAEQPAAS SSQTAKEKIG DDPVLEEAPS  600
ATDPDAWSEA QVLALVQALK AFPKDANQRW ERVAAAVPGK TVVQCKKKVA SMRTNFRTKK  660
AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1819429820124Zuotin
5dje_B1e-1819429820124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333354RKRKEEEAKIAAAAADIRKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178667.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178668.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178669.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A3B5Y6W40.0A0A3B5Y6W4_WHEAT; Uncharacterized protein
STRINGTraes_1AL_206AE5B76.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]