PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AL_179FC28F2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 28432.6 Da PI: 8.4574 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.8 | 3.3e-43 | 4 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppG+rF Pt+eelv +yL++k++g++ ++e+vi+ +d+++++Pw+Lp+ +++++ + w++F+ r+ ++a+g r++r+t sgyW Traes_1AL_179FC28F2.1 4 LPPGYRFYPTEEELVRFYLRHKLDGSRrADIERVIPVADVCSLDPWQLPEvhrgACASHGEPWFYFCARQDREARGGRPSRTTPSGYW 91 79**********************9997888889**************95466655567889************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ka g+ v+s++g+lvg+kkt+vfy+grap g kt+W m+eyr+ Traes_1AL_179FC28F2.1 92 KAAGTPGLVYSAGGHLVGTKKTMVFYRGRAPAGAKTKWKMNEYRA 136 *******************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.89E-48 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.198 | 4 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-23 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 257 aa Download sequence Send to blast |
MAALPPGYRF YPTEEELVRF YLRHKLDGSR RADIERVIPV ADVCSLDPWQ LPEVHRGACA 60 SHGEPWFYFC ARQDREARGG RPSRTTPSGY WKAAGTPGLV YSAGGHLVGT KKTMVFYRGR 120 APAGAKTKWK MNEYRALEED GADADAAAPA SNPVFQVRSE FSLCRLYTSS GNMRQFDRRP 180 CTAVAGGSRA SSSAALASPN EDVEVGRGQK RKRHAANDNT SSSDAYRHVQ QQQGKQEGAN 240 EELADDMTDW AEVLAWI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-30 | 3 | 167 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-30 | 3 | 167 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-30 | 3 | 167 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-30 | 3 | 167 | 16 | 163 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
3swm_B | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
3swm_C | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
3swm_D | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
3swp_A | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
3swp_B | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
3swp_C | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
3swp_D | 8e-30 | 3 | 167 | 19 | 166 | NAC domain-containing protein 19 |
4dul_A | 8e-30 | 3 | 167 | 16 | 163 | NAC domain-containing protein 19 |
4dul_B | 8e-30 | 3 | 167 | 16 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK359954 | 0.0 | AK359954.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1107F05. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158910.1 | 1e-164 | LOW QUALITY PROTEIN: NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 2e-64 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3B5Y287 | 0.0 | A0A3B5Y287_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446J459 | 0.0 | A0A446J459_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_179FC28F2.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 1e-65 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|