PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_1751C4BBF.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 243aa MW: 26862.8 Da PI: 4.8607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_1751C4BBF.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.9	1.6e-23	109	230	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................................tekerrtr 55 Yn+YA ++GFs+++++s+k ++g +k++fvC+k k+e ++ ++k+r++ Traes_1AL_1751C4BBF.2 109 HYNAYALQIGFSIKMNTSRKAMKTGVLIKQQFVCNKFRKPEADDGGaekihvlddiveqtkdddededivfldddnktkkRSKKRKRD 196 6**********************************99999988899************************999888888899 PP FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +tgCkak++vk+ dg+wev+ ++ eHnH+l+ Traes_1AL_1751C4BBF.2 197 KIVQTGCKAKMVVKLI-DGRWEVIYFVGEHNHPLV 230 999*********.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-21	109	230	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDIGDPVNST QQAAQNPELT GDSPTPHIVQ NATAPVAKTV ETDEQAPAAQ ESETDGHTLD 60 GTDAAGDTSV TIGNGLTGFG AENDEEAWSQ PNEPHVGMRF DTLEGAKEHY NAYALQIGFS 120 IKMNTSRKAM KTGVLIKQQF VCNKFRKPEA DDGGAEKIHV LDDIVEQTKD DDEDEDIVFL 180 DDDNKTKKRS KKRKRDKIVQ TGCKAKMVVK LIDGRWEVIY FVGEHNHPLV DKPSLTKYLR 240 SHQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194049.1	1e-65	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A453A2Q1	1e-169	A0A453A2Q1_AEGTS; Uncharacterized protein
STRING	Traes_1AL_1751C4BBF.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9528	8	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-16	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]