PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_16EECD38D.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 909aa    MW: 100174 Da    PI: 5.9415
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_16EECD38D.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-07759801145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            r +WT+ + +l++++ +q+G++ ++ I + ++  +++ q++ ++ 
  Traes_1AL_16EECD38D.2 759 RAKWTKSDTDLFYQGLQQFGSD-FAMIQQLFP-DKSRDQVRQKFK 801
                            569*******************.*********.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-9751806IPR009057Homeodomain-like
PfamPF159637.2E-24752832No hitNo description
PROSITE profilePS5129310.322757808IPR017884SANT domain
Gene3DG3DSA:1.10.10.606.2E-4757802IPR009057Homeodomain-like
SMARTSM007172.0E-7758806IPR001005SANT/Myb domain
CDDcd001672.26E-5761801No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
SCLRRRRGRA NWGEGNRRAA SPPSAPLPPP ASPCPSLPRG RLPTSPPPCR HRLRIPCVPR  60
HRRPTQSVLL RRCPPPLNRA AGNLGLFKEG PKGSSSPSPG KHLRGVTRSK QLPGGLKGGL  120
DMIDDEANFG DITDAPAEAE AAAKFHPNKL RGKLRKKSVP SRSVVPNRTV ETSDEKALAL  180
SQDNLSQGLA TNQEIASSAV HGSETIGGAE VCGGTIYTPS DDVLAVSSVD RVSQNDDPHD  240
DPSEVVTLQE SLVVSDTQAS STHPTSKTVD DLADFGELFD THSEEENAAK SKLKIKVKLS  300
KAASKSRKTG QKKAASTVDV VSQNKEDGND DVRGCNDEQV QAQHEEHVQT SDSQPPLGTD  360
DGTVDNFVNH NRILEEPGPE ETAAKLCPKS QRKPGRASSK AVGTSDDYAA ANLKDINASV  420
DIDSQDGLIN PHTDDTQPIF GEPSAEAAAT FLLDLGKKKS KGKSVTFVLP DDYEGVAATD  480
TNHNDIGSDE NLNTLPQQAP QKHCLTEEHS DDQEYTDRES QYYEGERSDH GVEQQSKLDV  540
GKQELSMKLR SRTEIQKVGL SEHIVDDHLD EDFVEPSAAE QNNDSSDENT AGGKQKAPRK  600
SRKKDPNKEP LRGSKRTSTK STSEKSQPNQ QKNKSEVSSR GCKRALKDTM TEQPEKNLTH  660
RIRQKRAQEV QTLLQKPDHE IDRMKLSVTH LRLLQEARER IQSKTPSGPS SSNQSSSRFG  720
DTDDFDPFGD NYDNDRTENQ ALESATKLNY HSYMDKKTRA KWTKSDTDLF YQGLQQFGSD  780
FAMIQQLFPD KSRDQVRQKF KSEDKKHPMQ VHDAILHRSR DNLYLKQVMK QLNIEDSLKD  840
INITQKQEVA STEGNTGNDV ISETNTFSVE NVSNLSDEEM GTHQSEVKEG EDVAAGNADD  900
VDLDVFDWY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3713370.0AK371337.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2131E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182802.10.0uncharacterized protein LOC109768495 isoform X1
RefseqXP_020182803.10.0uncharacterized protein LOC109768495 isoform X1
TrEMBLA0A452ZFL10.0A0A452ZFL1_AEGTS; Uncharacterized protein
STRINGTraes_1AL_16EECD38D.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.19e-27MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]