PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_169CE67D8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 10982.4 Da PI: 9.5423 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.3e-08 | 14 | 58 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT++ +l+ +a + + + +W+ +ar +g g+++ ++k ++ Traes_1AL_169CE67D8.1 14 WTPQQNKLFEQALAVHDRDtpdRWHNVARAVGGGKSADDVKRYYE 58 *****************99************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.075 | 6 | 61 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2E-7 | 10 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-11 | 13 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.38E-6 | 14 | 61 | No hit | No description |
Pfam | PF00249 | 4.7E-6 | 14 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MASLSMSAAG RAGWTPQQNK LFEQALAVHD RDTPDRWHNV ARAVGGGKSA DDVKRYYELL 60 VHDIARIEAG KVAFPAYRSP CPGPGHNAGY EADRLKHLKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-26 | 5 | 100 | 3 | 92 | RADIALIS |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951925 | 9e-84 | JF951925.1 Aegilops speltoides clone TaMYB42 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154612.1 | 1e-68 | protein RADIALIS-like 3 | ||||
Refseq | XP_020154876.1 | 1e-68 | protein RADIALIS-like 3 | ||||
TrEMBL | A0A446KD78 | 1e-68 | A0A446KD78_TRITD; Uncharacterized protein | ||||
TrEMBL | M7YZH4 | 1e-68 | M7YZH4_TRIUA; DnaJ homolog subfamily C member 2 | ||||
TrEMBL | W5A7M8 | 1e-68 | W5A7M8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_169CE67D8.1 | 2e-69 | (Triticum aestivum) | ||||
STRING | Traes_1BL_FDBBC5E8F.1 | 2e-69 | (Triticum aestivum) | ||||
STRING | TRIUR3_33857-P1 | 2e-69 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-30 | RAD-like 6 |
Publications ? help Back to Top | |||
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