PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_1444D461A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 140aa MW: 15686.3 Da PI: 10.7745 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 41.2 | 2.9e-13 | 2 | 34 | 24 | 56 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++++ LA++lgL rqV vWFqNrRa+ k Traes_1AL_1444D461A.1 2 TLNPNQKAALARQLGLRPRQVEVWFQNRRARTK 34 678899*************************98 PP | |||||||
2 | HD-ZIP_I/II | 102.6 | 3.3e-33 | 2 | 69 | 23 | 91 |
HD-ZIP_I/II 23 kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +L+p++K++lar+Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l Traes_1AL_1444D461A.1 2 TLNPNQKAALARQLGLRPRQVEVWFQNRRARTKLKQTEVDCESLKRCCETLTEENRRLQREVQELR-AL 69 89***************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.151 | 1 | 36 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-11 | 2 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-10 | 2 | 34 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-12 | 3 | 34 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.43E-9 | 3 | 37 | No hit | No description |
PRINTS | PR00031 | 2.2E-6 | 7 | 16 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 11 | 34 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-6 | 16 | 32 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.4E-11 | 36 | 70 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 2.8E-22 | 36 | 79 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
STLNPNQKAA LARQLGLRPR QVEVWFQNRR ARTKLKQTEV DCESLKRCCE TLTEENRRLQ 60 REVQELRALK LLAPPAPHLY MRAPPPTTLT MCPSCERVAP SGKPAVDESH AAMVTRAVPT 120 GPWGPVPVMP VFLGRPAQRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 36 | RRARTKLKQ |
2 | 42 | 47 | ESLKRC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366966 | 0.0 | AK366966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169616.1 | 9e-94 | homeobox-leucine zipper protein HOX1-like | ||||
Swissprot | Q01I23 | 1e-52 | HOX17_ORYSI; Homeobox-leucine zipper protein HOX17 | ||||
Swissprot | Q0JB92 | 1e-52 | HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17 | ||||
TrEMBL | A0A3B5Y1E3 | 4e-96 | A0A3B5Y1E3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_1444D461A.1 | 5e-97 | (Triticum aestivum) | ||||
STRING | Traes_1AL_1444D461A1.1 | 5e-97 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 3e-45 | homeobox protein 2 |
Publications ? help Back to Top | |||
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