PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_1360F98E7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 142aa MW: 15370.1 Da PI: 9.7488 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.9 | 4.1e-07 | 3 | 34 | 16 | 47 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47 k++G g+W+ I+r + Rt+ q+ s+ qky Traes_1AL_1360F98E7.1 3 LKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 34 79*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.529 | 1 | 39 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.2E-9 | 2 | 37 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.39E-8 | 2 | 39 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.50E-5 | 2 | 35 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-5 | 2 | 33 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MGLKKYGRGD WRNISRNYVT SRTPTQVASH AQKYFIRLNS GGKDKRRSSI HDITTVNIPD 60 DDHASNTNPS PSPPSALTAT SSAPEQFGAL ADSKPPPPLG GHHHFMPAHL YGSVKLEASN 120 NGYHGDSALM LMHQCGQLQP LG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951936 | 0.0 | JF951936.1 Triticum aestivum clone TaMYB53 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154949.1 | 4e-94 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-31 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A3B5Y2S4 | 3e-99 | A0A3B5Y2S4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_1360F98E7.1 | 1e-102 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-34 | MYB family protein |
Publications ? help Back to Top | |||
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