PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_00744EBC6.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 332aa    MW: 38306.8 Da    PI: 9.579
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_00744EBC6.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.9e-073394246
                           SSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHH CS
        Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqk 46
                           ++W++ Edell+ a      +            Wk +a++ +      +++t  qck++w k
  Traes_1AL_00744EBC6.2 33 KNWSKREDELLIAAWVHNSCDpidgnskraetYWKEVAAEYNkyatkeQKKTVGQCKNHWTK 94
                           58*************999999***************************99**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9572796IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.3E-43198IPR009057Homeodomain-like
CDDcd001670.00643492No hitNo description
PfamPF143031.3E-10138293IPR029466No apical meristem-associated, C-terminal domain
PfamPF048274.5E-12284327IPR006912Harbinger transposase-derived protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSPAYQVDED PTVNNQDGSD SSPDEIQKKG KGKNWSKRED ELLIAAWVHN SCDPIDGNSK  60
RAETYWKEVA AEYNKYATKE QKKTVGQCKN HWTKTTKKVT KFNGIYNVEK STWPSGSDDK  120
QLMERVRAKY MSVAKTKRPF PYEHWWEYVR KEAKWRRSYS VEEMNKRNKL NASGAYSSPT  180
QAIDEEGELQ RPPRRNTSKD AKDKQKSSSK SKCSGSLTSE SVDKFNEIQL RKSIAAEKMA  240
DATLIQAQAT KVQAEAEKER VETEKEKIKV DKLSKYLDLL HKDTSAYDDA QKKRHEQVHF  300
EVNHNKYNLG YYLVDGIYPE WATFVKSSIS ST
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169991.11e-175glutathione S-transferase T3-like
TrEMBLA0A453MDH41e-173A0A453MDH4_AEGTS; Uncharacterized protein
STRINGTraes_1AL_00744EBC6.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP449610
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]